View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11156_low_5 (Length: 329)
Name: NF11156_low_5
Description: NF11156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11156_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 45399145 - 45398864
Alignment:
| Q |
10 |
gcagagatggtgagggactctcggtttggacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttacc |
109 |
Q |
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| T |
45399145 |
gcagagatggtgagggactctcagtttcgacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttacc |
45399046 |
T |
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| Q |
110 |
attgttaatggtatcctcaaattatgcaatagctttcacacgttagtttagaaatagtgggtaatagtgtaactcaaaatctagctcagttagctcatat |
209 |
Q |
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| T |
45399045 |
attgttaatggtatcctcaaattatgcaatagctttcacacgtgagtttagaaatagtgggtaatagtgtgactcaaaatctagctcagttagctcatat |
45398946 |
T |
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| Q |
210 |
agatcgaaataagatttggatcgaagaggttccaacccaaattcattttgtgtatttcaaaaatatattgaattattgaaat |
291 |
Q |
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| T |
45398945 |
agatcgaaataagatttggatcgaagagattccaacccaaattcattttgtgtatttcaaaaatatattgaattattgaaat |
45398864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 28 - 291
Target Start/End: Original strand, 9357321 - 9357576
Alignment:
| Q |
28 |
tctcggtttggacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttaccattgttaatggtatcctc |
127 |
Q |
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| T |
9357321 |
tctcggtttccacaagtgattgtgagttgtgatagagttattaagtttttgaataggaaaggggaaaaagagagatcttaccattgttaatggtatcctc |
9357420 |
T |
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| Q |
128 |
aaattatgcaatagctttcacacgttagtttagaaatag--tgggtaatagtgtaactcaaaatctagctcagttagctcatatagatcgaaataagatt |
225 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
9357421 |
aaattatgcaatagctttcacacgtgagtttagaaatagattgggtaatagtatgactcataatctagcctagttagctcatatagatccaaataagatt |
9357520 |
T |
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| Q |
226 |
tggatcgaagaggttccaacccaaattcattttgtgtatttcaaaaatatattgaattattgaaat |
291 |
Q |
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| T |
9357521 |
t----------ggttccaagttaaattcattttgtgtatttcaaagatatattgaattattgaaat |
9357576 |
T |
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