View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11156_low_7 (Length: 278)

Name: NF11156_low_7
Description: NF11156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11156_low_7
NF11156_low_7
[»] chr2 (5 HSPs)
chr2 (1-117)||(39812162-39812278)
chr2 (1-117)||(32246577-32246695)
chr2 (1-118)||(44312798-44312911)
chr2 (1-119)||(19349068-19349189)
chr2 (1-117)||(19344212-19344331)
[»] chr8 (8 HSPs)
chr8 (1-119)||(25328452-25328570)
chr8 (1-117)||(39784998-39785114)
chr8 (1-89)||(6311121-6311208)
chr8 (132-259)||(12196891-12197013)
chr8 (132-259)||(12441319-12441441)
chr8 (1-117)||(7290101-7290210)
chr8 (1-90)||(35745212-35745302)
chr8 (1-90)||(10684438-10684529)
[»] chr1 (7 HSPs)
chr1 (2-119)||(41398030-41398147)
chr1 (14-117)||(41386543-41386646)
chr1 (1-120)||(44024047-44024166)
chr1 (1-118)||(39445291-39445410)
chr1 (1-117)||(25445264-25445382)
chr1 (1-117)||(1055186-1055304)
chr1 (1-90)||(43988640-43988730)
[»] chr7 (13 HSPs)
chr7 (1-117)||(31109757-31109872)
chr7 (1-117)||(24024502-24024618)
chr7 (1-117)||(12396710-12396822)
chr7 (1-119)||(12406128-12406242)
chr7 (1-118)||(4866527-4866640)
chr7 (1-90)||(19992134-19992223)
chr7 (1-96)||(21812413-21812508)
chr7 (1-119)||(24261497-24261619)
chr7 (1-66)||(20357733-20357797)
chr7 (1-90)||(16879893-16879984)
chr7 (1-90)||(16884749-16884840)
chr7 (1-90)||(24266376-24266467)
chr7 (1-89)||(2057786-2057870)
[»] scaffold0127 (1 HSPs)
scaffold0127 (14-117)||(34136-34239)
[»] chr6 (13 HSPs)
chr6 (1-119)||(14737751-14737868)
chr6 (1-117)||(28184297-28184415)
chr6 (1-117)||(14742610-14742725)
chr6 (1-120)||(11856762-11856882)
chr6 (1-118)||(22010871-22010984)
chr6 (1-117)||(28155745-28155861)
chr6 (1-118)||(6438293-6438411)
chr6 (1-90)||(6005238-6005328)
chr6 (1-90)||(33330621-33330711)
chr6 (1-90)||(33336118-33336208)
chr6 (1-90)||(5343301-5343391)
chr6 (1-90)||(16838565-16838655)
chr6 (1-66)||(30125980-30126044)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-122)||(9814-9935)
scaffold0355 (1-116)||(61-170)
[»] chr4 (9 HSPs)
chr4 (1-117)||(3813816-3813934)
chr4 (1-118)||(5732457-5732572)
chr4 (1-117)||(18855519-18855637)
chr4 (1-117)||(45347992-45348109)
chr4 (1-117)||(45357471-45357588)
chr4 (1-119)||(9224581-9224700)
chr4 (1-117)||(9229368-9229484)
chr4 (1-117)||(51520258-51520367)
chr4 (1-117)||(56146886-56146995)
[»] chr5 (17 HSPs)
chr5 (1-118)||(15044483-15044597)
chr5 (1-117)||(28807749-28807868)
chr5 (1-119)||(43598523-43598634)
chr5 (1-119)||(43604015-43604126)
chr5 (1-119)||(43609507-43609618)
chr5 (1-117)||(1457336-1457445)
chr5 (1-117)||(43592080-43592189)
chr5 (3-122)||(27444766-27444878)
chr5 (1-95)||(37561620-37561715)
chr5 (1-90)||(37556798-37556888)
chr5 (3-119)||(27449613-27449722)
chr5 (1-90)||(2785196-2785286)
chr5 (1-90)||(31397167-31397257)
chr5 (1-90)||(31402024-31402114)
chr5 (1-90)||(33791137-33791227)
chr5 (1-90)||(33768000-33768090)
chr5 (1-89)||(30631231-30631317)
[»] chr3 (10 HSPs)
chr3 (1-118)||(18656227-18656342)
chr3 (1-117)||(22173369-22173484)
chr3 (1-96)||(2677262-2677358)
chr3 (1-96)||(2673106-2673202)
chr3 (1-120)||(10207722-10207844)
chr3 (1-90)||(8512036-8512126)
chr3 (1-90)||(8516916-8517006)
chr3 (1-66)||(2671772-2671836)
chr3 (1-62)||(24967957-24968018)
chr3 (1-70)||(28504041-28504108)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-119)||(153-273)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-117)||(35236-35352)
[»] scaffold0479 (1 HSPs)
scaffold0479 (27-118)||(13140-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (1-120)||(19339-19461)
scaffold0197 (1-119)||(14483-14605)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-90)||(149130-149220)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-90)||(2425-2515)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-90)||(182138-182229)
[»] scaffold0978 (1 HSPs)
scaffold0978 (1-66)||(423-487)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39812162 - 39812278
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39812162 tttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtgaaggtttctttg 39812261  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  39812262 gaaccggattcacaaca 39812278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32246695 - 32246577
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32246695 tttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttctttg 32246596  T
Q  101 --gaaccggattcacaaca 117  Q
      |||||||||||||||||    
T  32246595 tagaaccggattcacaaca 32246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44312798 - 44312911
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||| |       
T  44312798 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtgaagattttt--- 44312893  T
Q  101 gaaccggattcacaacaa 118  Q
    ||||||||||||||||||    
T  44312894 gaaccggattcacaacaa 44312911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19349189 - 19349068
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctt-- 98  Q
    |||||||||||| |||||||| | ||||| |||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |      
T  19349189 tttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtgaaggtttcatta 19349090  T
Q  99 -tggaaccggattcacaacaat 119  Q
     | |||||||||||||||||||    
T  19349089 gttgaaccggattcacaacaat 19349068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 19344331 - 19344212
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctt-- 98  Q
    |||||||||||| |||||||| | ||||| |||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |      
T  19344331 tttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtgaaggtttcatta 19344232  T
Q  99 -tggaaccggattcacaaca 117  Q
     | |||||||||||||||||    
T  19344231 gttgaaccggattcacaaca 19344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 25328452 - 25328570
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||    
T  25328452 tttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtgaaggtttctttg 25328551  T
Q  101 gaaccggattcacaacaat 119  Q
    |||||||||||||||||||    
T  25328552 gaaccggattcacaacaat 25328570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39784998 - 39785114
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39784998 tttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtgaaggtttctttg 39785097  T
Q  101 gaaccggattcacaaca 117  Q
    ||||| |||||||||||    
T  39785098 gaaccagattcacaaca 39785114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6311208 - 6311121
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 89  Q
    |||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  6311208 tttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 12197013 - 12196891
Alignment:
Q  132 aaagtcaagtacgctattgtgctatagctgctattttacaacgctttgtactaaaacacatatagtgagcaaaacaatagcggtttgttaaaacttcatt 231  Q
    |||||||| |||| |||||||||||||||||||||||||||| | ||||||| ||||||||||    ||| |||||||||||||||||||||| ||   |    
T  12197013 aaagtcaattacgttattgtgctatagctgctattttacaacacattgtact-aaacacatat----agcgaaacaatagcggtttgttaaaattttgct 12196919  T
Q  232 gtgctatagcgcttgagctgaagctact 259  Q
    |||||||||||||  |||||||||||||    
T  12196918 gtgctatagcgctctagctgaagctact 12196891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 12441441 - 12441319
Alignment:
Q  132 aaagtcaagtacgctattgtgctatagctgctattttacaacgctttgtactaaaacacatatagtgagcaaaacaatagcggtttgttaaaacttcatt 231  Q
    |||||||| |||| |||||||||||||||||||||||||||| | ||||||| ||||||||||    ||| |||||||||||||||||||||| ||   |    
T  12441441 aaagtcaattacgttattgtgctatagctgctattttacaacacattgtact-aaacacatat----agcgaaacaatagcggtttgttaaaattttgct 12441347  T
Q  232 gtgctatagcgcttgagctgaagctact 259  Q
    |||||||||||||  |||||||||||||    
T  12441346 gtgctatagcgctctagctgaagctact 12441319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7290101 - 7290210
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| | |||||||| |||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||       ||||    
T  7290101 tttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaat-gtttatttcattggtgtga------gtttg 7290193  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  7290194 gaaccggattcacaaca 7290210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35745302 - 35745212
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  35745302 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 35745212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10684438 - 10684529
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  10684438 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaa 10684529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 41398147 - 41398030
Alignment:
Q  2 ttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttgg 101  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtgaaggtttctttgg 41398048  T
Q  102 aaccggattcacaacaat 119  Q
    ||||||||||||||||||    
T  41398047 aaccggattcacaacaat 41398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 41386646 - 41386543
Alignment:
Q  14 gcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttggaaccggattcac 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41386646 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcac 41386547  T
Q  114 aaca 117  Q
    ||||    
T  41386546 aaca 41386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 44024047 - 44024166
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  44024047 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttcattggtgtgaaggtttatttg 44024146  T
Q  101 gaaccggattcacaacaata 120  Q
    ||| ||||||||||||||||    
T  44024147 gaatcggattcacaacaata 44024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39445410 - 39445291
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||    
T  39445410 tttgttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggttcgtttg 39445311  T
Q  101 --gaaccggattcacaacaa 118  Q
      ||||||||||||||||||    
T  39445310 tagaaccggattcacaacaa 39445291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 25445264 - 25445382
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  ||||    
T  25445264 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttcattggtgtgaaggttcgtttg 25445363  T
Q  101 --gaaccggattcacaaca 117  Q
      |||||||||||||||||    
T  25445364 tagaaccggattcacaaca 25445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1055186 - 1055304
Alignment:
Q  1 tttgttgttgttggcttgga-gactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttcttt 99  Q
    |||||||||||  ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||    
T  1055186 tttgttgttgtaagcttggaagac-atttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggttcgatt 1055284  T
Q  100 g--gaaccggattcacaaca 117  Q
    |  |||||||||||||||||    
T  1055285 gtagaaccggattcacaaca 1055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 43988640 - 43988730
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||  | ||||| |||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||    
T  43988640 tttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggcgtgaa 43988730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31109757 - 31109872
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  31109757 tttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcatt-gtttatttcattggtgtgaaggtttctttg 31109855  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  31109856 gaaccggattcacaaca 31109872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24024502 - 24024618
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaag-tttcttt 99  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||    
T  24024502 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggttttcttt 24024600  T
Q  100 ggaaccggattcacaaca 117  Q
    ||||||||||||||||||    
T  24024601 ggaaccggattcacaaca 24024618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12396822 - 12396710
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||   |||     
T  12396822 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggt---tttt 12396727  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  12396726 gaaccggattcacaaca 12396710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 12406242 - 12406128
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||   |||     
T  12406242 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggt---tttt 12406147  T
Q  101 gaaccggattcacaacaat 119  Q
    |||| ||||||||||||||    
T  12406146 gaacaggattcacaacaat 12406128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 4866640 - 4866527
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||   |||     
T  4866640 tttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggt---tttt 4866545  T
Q  101 gaaccggattcacaacaa 118  Q
    ||||||||||||||||||    
T  4866544 gaaccggattcacaacaa 4866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 19992223 - 19992134
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaa 90  Q
    |||||||||||  |||||||  | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  19992223 tttgttgttgtaagcttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatttcattggtgtgaa 19992134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 21812413 - 21812508
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttc 96  Q
    |||||||||||| |||||||  | ||||| |||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  21812413 tttgttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtgaaggtttc 21812508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 24261497 - 24261619
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagtttctt 98  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| ||||||||||||| |||  ||    
T  24261497 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcatt 24261596  T
Q  99 --tggaaccggattcacaacaat 119  Q
      | |||||||||||||||||||    
T  24261597 agttgaaccggattcacaacaat 24261619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20357733 - 20357797
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatc 66  Q
    |||||||||||| |||||||||| |||||  ||||| ||||| ||||||| |||||||||||||||    
T  20357733 tttgttgttgttagcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 20357797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16879984 - 16879893
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  16879984 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaa 16879893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16884840 - 16884749
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  16884840 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaa 16884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24266376 - 24266467
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  24266376 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaa 24266467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2057870 - 2057786
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 89  Q
    |||||||||||| ||||||| || |||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  2057870 tttgttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 2057786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 34136 - 34239
Alignment:
Q  14 gcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttggaaccggattcac 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34136 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcac 34235  T
Q  114 aaca 117  Q
    ||||    
T  34236 aaca 34239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 14737751 - 14737868
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  14737751 tttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttatttg 14737849  T
Q  101 gaaccggattcacaacaat 119  Q
     ||||||||||||||||||    
T  14737850 aaaccggattcacaacaat 14737868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 28184415 - 28184297
Alignment:
Q  1 tttgttgttgttggcttggagactattt--gttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctt 98  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  28184415 tttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttgtt 28184316  T
Q  99 tggaaccggattcacaaca 117  Q
    || ||||||||||||||||    
T  28184315 tgaaaccggattcacaaca 28184297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 14742610 - 14742725
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  14742610 tttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttatttg 14742708  T
Q  101 gaaccggattcacaaca 117  Q
     ||||||||||||||||    
T  14742709 aaaccggattcacaaca 14742725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 11856882 - 11856762
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaag--tttctt 98  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |  ||| ||    
T  11856882 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggtttttttt 11856784  T
Q  99 tggaaccggattcacaacaata 120  Q
    | ||||||||||||||||||||    
T  11856783 ttgaaccggattcacaacaata 11856762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 22010871 - 22010984
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||| |       
T  22010871 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtgaagattttt--- 22010966  T
Q  101 gaaccggattcacaacaa 118  Q
    ||||||||||||||||||    
T  22010967 gaaccggattcacaacaa 22010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28155745 - 28155861
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaag-tttcttt 99  Q
    |||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||| |||    
T  28155745 tttgttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcatt-gtttattgcattggtgtgaaggttttgttt 28155843  T
Q  100 ggaaccggattcacaaca 117  Q
     |||||||||||||||||    
T  28155844 agaaccggattcacaaca 28155861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6438411 - 6438293
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||  | ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||  ||||    
T  6438411 tttgttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggttcgtttg 6438313  T
Q  101 --gaaccggattcacaacaa 118  Q
      |||||||| |||||||||    
T  6438312 tagaaccggaatcacaacaa 6438293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 6005328 - 6005238
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  6005328 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 6005238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33330621 - 33330711
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  33330621 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaa 33330711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33336118 - 33336208
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| | |||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  33336118 tttgttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 33336208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5343391 - 5343301
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||  ||||| |||||||||||||    
T  5343391 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaa 5343301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16838655 - 16838565
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| ||||| || | |||||  ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||    
T  16838655 tttgttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaa 16838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30125980 - 30126044
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatc 66  Q
    |||||||| ||| |||||||||| |||||  ||||| ||||||||||| | |||||||||||||||    
T  30125980 tttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacacatc 30126044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9814 - 9935
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  9814 tttgttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttgtttg 9913  T
Q  101 gaaccggattcacaacaatagt 122  Q
     |||||||||||||||| ||||    
T  9914 aaaccggattcacaacattagt 9935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 61 - 170
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    ||||||||||||  ||||||||| ||||| ||||||||||||||      |||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  61 tttgttgttgtttacttggagaccatttgctctcattgattatc------acttgctccacacatcattggtttatttaattggtgtgaaggtttgtttg 154  T
Q  101 gaaccggattcacaac 116  Q
     |||||||||||||||    
T  155 aaaccggattcacaac 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3813934 - 3813816
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3813934 tttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttctttg 3813835  T
Q  101 --gaaccggattcacaaca 117  Q
      |||||||||||||||||    
T  3813834 tagaaccggattcacaaca 3813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5732572 - 5732457
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||  |  ||||||||||||||| |||||||||    
T  5732572 tttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattg--tattttcattggtgtgaaggtttctttg 5732475  T
Q  101 gaaccggattcacaacaa 118  Q
    ||||||||||||||||||    
T  5732474 gaaccggattcacaacaa 5732457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 18855637 - 18855519
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||    
T  18855637 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggttcgcttg 18855538  T
Q  101 --gaaccggattcacaaca 117  Q
      |||||||||||||||||    
T  18855537 tagaaccggattcacaaca 18855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45347992 - 45348109
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  45347992 tttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttctttg 45348090  T
Q  101 --gaaccggattcacaaca 117  Q
      |||||||||||||||||    
T  45348091 tagaaccggattcacaaca 45348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45357471 - 45357588
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  45357471 tttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttctttg 45357569  T
Q  101 --gaaccggattcacaaca 117  Q
      |||||||||||||||||    
T  45357570 tagaaccggattcacaaca 45357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9224581 - 9224700
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaag--tttctt 98  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |  ||| ||    
T  9224581 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggtttttttt 9224679  T
Q  99 tggaaccggattcacaacaat 119  Q
    | |||||||||||||||||||    
T  9224680 ttgaaccggattcacaacaat 9224700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 9229368 - 9229484
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaag-tttcttt 99  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| | ||| |||    
T  9229368 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggtttttttt 9229466  T
Q  100 ggaaccggattcacaaca 117  Q
      ||||||||||||||||    
T  9229467 ttaaccggattcacaaca 9229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 51520367 - 51520258
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||       ||||    
T  51520367 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtga------gtttg 51520275  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  51520274 gaaccggattcacaaca 51520258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 56146886 - 56146995
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||      ||||    
T  56146886 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaa------tttg 56146978  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  56146979 gaaccggattcacaaca 56146995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15044597 - 15044483
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||   ||||||||||||||||| |||||||||    
T  15044597 tttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg---tatttcattggtgtgaaggtttctttg 15044501  T
Q  101 gaaccggattcacaacaa 118  Q
    ||||||||||||||||||    
T  15044500 gaaccggattcacaacaa 15044483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28807749 - 28807868
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctt-- 98  Q
    |||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |      
T  28807749 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttcatta 28807848  T
Q  99 -tggaaccggattcacaaca 117  Q
     | |||||||||||||||||    
T  28807849 gttgaaccggattcacaaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 43598634 - 43598523
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||      |||||    
T  43598634 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtga------ctttg 43598542  T
Q  101 gaaccggattcacaacaat 119  Q
    |||||||||||||||||||    
T  43598541 gaaccggattcacaacaat 43598523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 43604126 - 43604015
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||      |||||    
T  43604126 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtga------ctttg 43604034  T
Q  101 gaaccggattcacaacaat 119  Q
    |||||||||||||||||||    
T  43604033 gaaccggattcacaacaat 43604015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 43609618 - 43609507
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||      |||||    
T  43609618 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtga------ctttg 43609526  T
Q  101 gaaccggattcacaacaat 119  Q
    |||||||||||||||||||    
T  43609525 gaaccggattcacaacaat 43609507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1457336 - 1457445
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||       ||||    
T  1457336 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtga------gtttg 1457428  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  1457429 gaaccggattcacaaca 1457445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 43592189 - 43592080
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||      |||||    
T  43592189 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattgatgtga------ctttg 43592097  T
Q  101 gaaccggattcacaaca 117  Q
    |||||||||||||||||    
T  43592096 gaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 27444878 - 27444766
Alignment:
Q  3 tgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttgga 102  Q
    |||||||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||       ||||||    
T  27444878 tgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtga------gtttgga 27444786  T
Q  103 accggattcacaacaatagt 122  Q
    ||||||||||||||| ||||    
T  27444785 accggattcacaacactagt 27444766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37561620 - 37561715
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagttt 95  Q
    |||||||||||| |||||||| | ||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  37561620 tttgttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggttt 37561715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37556798 - 37556888
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | ||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  37556798 tttgttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaa 37556888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 27449722 - 27449613
Alignment:
Q  3 tgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttgga 102  Q
    |||||||||| |||||||||| |||||| ||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||       ||||||    
T  27449722 tgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcatt-gtttatttcattggtgtga------gtttgga 27449630  T
Q  103 accggattcacaacaat 119  Q
    |||||||||||||||||    
T  27449629 accggattcacaacaat 27449613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2785286 - 2785196
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  2785286 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 2785196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31397167 - 31397257
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  31397167 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaa 31397257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31402024 - 31402114
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  31402024 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaa 31402114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33791227 - 33791137
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  33791227 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaa 33791137  T

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Target: chr5; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33768090 - 33768000
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| ||||||||   |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  33768090 tttgttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaa 33768000  T

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Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30631317 - 30631231
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 89  Q
    ||||||||||||| |||| | || |||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||| ||||||    
T  30631317 tttgttgttgttg-cttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcatt-gtttatttcatttgtgtga 30631231  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18656342 - 18656227
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||  |  ||||||||||||||| |||||||||    
T  18656342 tttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattg--tattttcattggtgtgaaggtttctttg 18656245  T
Q  101 gaaccggattcacaacaa 118  Q
    ||||||||||||||||||    
T  18656244 gaaccggattcacaacaa 18656227  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22173369 - 22173484
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||  ||| ||||    
T  22173369 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaagatttgtttg 22173467  T
Q  101 gaaccggattcacaaca 117  Q
     ||||||||||||||||    
T  22173468 aaaccggattcacaaca 22173484  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2677262 - 2677358
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagtttc 96  Q
    |||||||||||| |||||||| | ||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  2677262 tttgttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttc 2677358  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2673106 - 2673202
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagtttc 96  Q
    |||||||||||| |||||||| | ||||  |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  2673106 tttgttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttc 2673202  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 10207844 - 10207722
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagtttctt- 98  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||  ||     
T  10207844 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcatta 10207745  T
Q  99 -tggaaccggattcacaacaata 120  Q
     | || |||||||||||||||||    
T  10207744 gttgagccggattcacaacaata 10207722  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8512126 - 8512036
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||  | ||||| |||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  8512126 tttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaa 8512036  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8517006 - 8516916
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||  | ||||| |||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  8517006 tttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaa 8516916  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2671772 - 2671836
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatc 66  Q
    |||||||||||| |||||||||| |||||  ||||| ||||| ||||||| |||||||||||||||    
T  2671772 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 2671836  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24968018 - 24967957
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccaca 62  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| |||||||||||||||||    
T  24968018 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28504041 - 28504108
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattg 70  Q
    ||||||||||||| |||||| || |||| ||||||| ||||||||||| |  ||||||||||||||||||    
T  28504041 tttgttgttgttg-cttggaaaccattt-ttctcatagattatcactaccttttgctccacacatcattg 28504108  T

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Target: scaffold0464 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 273 - 153
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg 100  Q
    |||||||||||| |||||||  | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||  ||||    
T  273 tttgttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttcattggtgtgaaggttcgtttg 174  T
Q  101 --gaaccggattcacaacaat 119  Q
      |||||||||||||||||||    
T  173 tagaaccggattcacaacaat 153  T

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Target: scaffold0135 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 35236 - 35352
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaag-tttcttt 99  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| | ||| |||    
T  35236 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatttcattggtgtgaaggtttttttt 35334  T
Q  100 ggaaccggattcacaaca 117  Q
      ||||||||||||||||    
T  35335 ttaaccggattcacaaca 35352  T

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Target: scaffold0479 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 13233 - 13140
Alignment:
Q  27 ttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaagtttctttg--gaaccggattcacaacaa 118  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||  ||||  ||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

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Target: scaffold0197 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 19339 - 19461
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagtttctt- 98  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||  ||     
T  19339 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcatta 19438  T
Q  99 -tggaaccggattcacaacaata 120  Q
     | || |||||||||||||||||    
T  19439 gttgagccggattcacaacaata 19461  T

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Target: scaffold0197; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 14483 - 14605
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaagtttctt 98  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| ||||||||||||| |||  ||    
T  14483 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcatt 14582  T
Q  99 --tggaaccggattcacaacaat 119  Q
      | |||||||||||||||||||    
T  14583 agttgaaccggattcacaacaat 14605  T

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Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 149130 - 149220
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  149130 tttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaa 149220  T

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Target: scaffold0259 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2425 - 2515
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||||| |||||||| | |||||  ||||| |||||||  |||||||||||||||||||||||| |||||| |||||||||||||    
T  2425 tttgttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaa 2515  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 182138 - 182229
Alignment:
Q  1 tttgttgttg-ttggcttggagactatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 90  Q
    |||||||||| || |||||||| | |||||  ||||| ||||| | ||||| ||||||||||||||| ||| |||||| |||||||||||||    
T  182138 tttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaa 182229  T

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Target: scaffold0978 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 423 - 487
Alignment:
Q  1 tttgttgttgttggcttggagactatttgttctcattgattatcactatcacttgctccacacatc 66  Q
    ||||||||||||| |||||| || |||| | ||||| ||||| ||||||| |||||||||||||||    
T  423 tttgttgttgttg-cttggaaaccatttttgctcatagattaccactatctcttgctccacacatc 487  T

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