View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11156_low_8 (Length: 269)
Name: NF11156_low_8
Description: NF11156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11156_low_8 |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 11711237 - 11711487
Alignment:
| Q |
5 |
ttcagtctctcttaactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaag |
104 |
Q |
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||||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11711237 |
ttcagactcttttaactttgggatatcgtcatcttgaagtgttttttgttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaag |
11711336 |
T |
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| Q |
105 |
aatccagctttggaaaatggggtgacatgacattgagaaacatcattgaactggctatttaagggagtataaagcctttcagtagtttctctgtcagcat |
204 |
Q |
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| T |
11711337 |
aatccagctttggcaaatggggtgacatgacattgagaaatatcattgaactggctatttaagggagtataaagcctttcagtagtttctctgtcagcat |
11711436 |
T |
|
| Q |
205 |
caccgtcttcatgtttacatgctttgtaagtgcataacagaagcaaagttg |
255 |
Q |
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| T |
11711437 |
cgccgtcttcacgtttacatgctttgtaagtgcataacagaagcaaagttg |
11711487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 11662320 - 11662126
Alignment:
| Q |
11 |
ctctcttaactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatcca |
110 |
Q |
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|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| | ||||||| ||| ||| |
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| T |
11662320 |
ctctcttagcttcgggatatcctcatcttgaagttctttttcttgaccccttttcatcaatggattcaaccacgaaaacgatgttttactaatgaaccca |
11662221 |
T |
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| Q |
111 |
gctttggaaaatggggtgacatgacattgagaaacatcattgaactggctatttaagggagtataaagcctttcagtagtttctctgtcagcatc |
205 |
Q |
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| T |
11662220 |
actttggcaaatggggttaaatggctatcagtaacatcatttaattgcatatttatgggggcataaaggctttcaacagtttctctatcaacatc |
11662126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 11617502 - 11617383
Alignment:
| Q |
13 |
ctcttaactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatccagc |
112 |
Q |
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||||||||||||||||||| || ||| |||||||||| ||| ||||| |||||||||| ||||||||||||||||| || |||| |||||||||||||| |
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| T |
11617502 |
ctcttaactttgggatatcatcgtctagaagtgttttctctagacccgttttcatcaatggattcaaccaccaaaacgaagtctttctaaagaatccagc |
11617403 |
T |
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| Q |
113 |
tttggaaaatggggtgacat |
132 |
Q |
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|||||||| ||||| |||| |
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| T |
11617402 |
attggaaaaaggggttacat |
11617383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 11674761 - 11674862
Alignment:
| Q |
23 |
tgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatccagctttggaaaat |
122 |
Q |
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|||||| |||||||| |||| || |||||||||||||||||||| || ||||||||||||||||| | |||||||||| |||||||| ||| |||||| |
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| T |
11674761 |
tgggatttcctcatcgagaagcgtcttttcttgaccccttttcattaatggattcaaccaccaaaaccaaatcttactaatgaatccagatttagaaaat |
11674860 |
T |
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| Q |
123 |
gg |
124 |
Q |
| |
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|| |
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| T |
11674861 |
gg |
11674862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 11632723 - 11632850
Alignment:
| Q |
6 |
tcagtctctcttaactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaaga |
105 |
Q |
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|||| ||||||||| || |||||||||||||||||||||||||| |||||| |||||||||| | ||| ||||||||||| | |||||||| |||| |
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| T |
11632723 |
tcagactctcttaatttcgggatatcctcatcttgaagtgttttcgtttgacctgttttcatcaatgtatttaaccaccaaaaccaaatcttactcaaga |
11632822 |
T |
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| Q |
106 |
atccagctttggaaaatggggtgacatg |
133 |
Q |
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||||||| ||| |||||| || ||||| |
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| T |
11632823 |
atccagcattgccaaatggagtaacatg |
11632850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 11740585 - 11740676
Alignment:
| Q |
30 |
tcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatccagctttggaaaa |
121 |
Q |
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||||| || |||||| |||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||||||||||| ||||||||||| |
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| T |
11740585 |
tcctcgtcatgaagtattttttcttgtccccttttaatcaatggattcaaccaccaaaatgacatcaaactaaagaatcctgctttggaaaa |
11740676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 12094798 - 12094907
Alignment:
| Q |
18 |
aactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatccagctttgg |
117 |
Q |
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||||||||||| ||||| || | ||||||||| | ||||||| ||||||| | ||||||||||||||||| || ||| ||||| || ||| ||||||| |
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| T |
12094798 |
aactttgggatgtcctcgtcctcaagtgttttattttgaccctttttcattagtggattcaaccaccaaaatgacatccgactaaggagtccggctttgg |
12094897 |
T |
|
| Q |
118 |
aaaatggggt |
127 |
Q |
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|||||||||| |
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| T |
12094898 |
aaaatggggt |
12094907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 11755113 - 11755028
Alignment:
| Q |
42 |
agtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatccagctttggaaaatggggt |
127 |
Q |
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|||||||| | ||||||| ||||||||| ||||||||||||||||| || ||| ||||| || ||||||||||| ||||||||| |
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| T |
11755113 |
agtgttttcttttgaccctttttcatcagtggattcaaccaccaaaatgacatccgactaaggagtccagctttggcaaatggggt |
11755028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 11856 - 11735
Alignment:
| Q |
11 |
ctctcttaactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatcca |
110 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||| ||||||||||| || |||||||||||||||||| |
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| T |
11856 |
ctctcttaattttgggatatcctcatcctgaagtgttttttcttgactcgttttcatcaatggatttaaccaccaaaatgaaatcttactaaagaatcca |
11757 |
T |
|
| Q |
111 |
gctttggaaaatggggtgacat |
132 |
Q |
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||||| |||| ||||| |||| |
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| T |
11756 |
gctttacaaaacggggttacat |
11735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 9677 - 9793
Alignment:
| Q |
11 |
ctctcttaactttgggatatcctcatcttgaagtgttttttcttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatcca |
110 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||||| |
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| T |
9677 |
ctctcttaacttcgggatatcctcgtctacaagtgttttctcttgaccccttttcatcaatggatttaaccaccaaaacgaaatcttactgaagaatcca |
9776 |
T |
|
| Q |
111 |
gctttggaaaatggggt |
127 |
Q |
| |
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|| || ||||||||||| |
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| T |
9777 |
gccttcgaaaatggggt |
9793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 41648034 - 41648088
Alignment:
| Q |
72 |
ggattcaaccaccaaaaagatatcttactaaagaatccagctttggaaaatgggg |
126 |
Q |
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||||||||||||||||| || |||||||| ||||||||||| ||||||||||||| |
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| T |
41648034 |
ggattcaaccaccaaaacgaaatcttactgaagaatccagccttggaaaatgggg |
41648088 |
T |
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