View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11156_low_9 (Length: 232)
Name: NF11156_low_9
Description: NF11156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11156_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 25792969 - 25792763
Alignment:
| Q |
6 |
ttatagcacattgcttctcatttactaaaggtgttgagaaactatacatttagaaagcagaggagtgagccagccaaggaacctccaacagcaaggagtg |
105 |
Q |
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| T |
25792969 |
ttatagcacattgcttctcatttactaaaggtgttgagaaactatacatttagaaagcagaggagtgagccagccaaggaacctccaacagcaaggagtg |
25792870 |
T |
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| Q |
106 |
ccaagaaacgaaagtcaaaaattacctgatcatacaaccaaaaatcttacaattagaaaaggaatgtatacttttcgtttttgataagctaatgttagta |
205 |
Q |
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| T |
25792869 |
ccaagaaacgaaagtcaaaaattacctgatcatacaaccaaaaatcttacaattagaaaaggaatgtataccttttg-ttttgataagctaatgttagta |
25792771 |
T |
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| Q |
206 |
gttagttt |
213 |
Q |
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|||||||| |
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| T |
25792770 |
gttagttt |
25792763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 10135187 - 10135110
Alignment:
| Q |
49 |
atacatttagaaagcagaggagtgagccagccaaggaacctccaacagcaaggagtgccaagaaacgaaagtcaaaaa |
126 |
Q |
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| T |
10135187 |
atacatttagaaagcagaggagtgagccagccaaggaacctccaacagcaaggaatgcaaagaaacgaaagtcgaaaa |
10135110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 10073091 - 10073013
Alignment:
| Q |
71 |
tgagccagccaaggaacctccaacagcaaggagtgccaagaaacgaaagtcaaaaattacctgatcatacaaccaaaaa |
149 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||| |||||| |
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| T |
10073091 |
tgagccagtcaaggaacctccaacagcaaggagtgcaaagaaacgaaagtcgaaaacgacctgatcacacaatcaaaaa |
10073013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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