View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11157_high_1 (Length: 500)
Name: NF11157_high_1
Description: NF11157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11157_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Complemental strand, 42678719 - 42678251
Alignment:
| Q |
13 |
cagaccaccgcatcagcatcgcaaaatgaaacgagtccacaccttgaacagtgttacgaaagaagtcgataccctgacggcggagcatgtcaatggagtc |
112 |
Q |
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| T |
42678719 |
cagaccaccgcatcagcatcgcaaaatgaaacgagtccacaccttgaacagtgttacgaaagaagttgataccctgacggtggagcatgtcaatggagtc |
42678620 |
T |
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| Q |
113 |
tttattgtggaggtccctcttgacgttaaaatcacggaaattgaattcccagatgtaacgattgttctcatcactagggaggttaccaattgcatccgat |
212 |
Q |
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| T |
42678619 |
tttgttgtggagatccctcttgacgttaaagtcacggaaattgaattcccagatgtaacgattgttctgatcactagggaggttaccaattgcatccgat |
42678520 |
T |
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| Q |
213 |
aaggtaagaccgatctgaatgatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaat |
312 |
Q |
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| T |
42678519 |
aaggtaagaccgatctgaataatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaat |
42678420 |
T |
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| Q |
313 |
gaacaattccaggaaattcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacac |
412 |
Q |
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| T |
42678419 |
gaacaattccaggaaattcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacac |
42678320 |
T |
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| Q |
413 |
tttacggatcatgattggttttgaactaggctcttccttcatcattatcattgtggtcttgaatcaggt |
481 |
Q |
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| T |
42678319 |
tttacggatcatgattggttttgaaccagggtcttccttcatcattatcattgtggtcttgaatcaggt |
42678251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 457
Target Start/End: Original strand, 54704090 - 54704476
Alignment:
| Q |
74 |
gaagtcgataccctgacggcggagcatgtcaatggagtctttattgtggaggtccctcttgacgttaaaatcacggaaattgaattcccagatgtaacga |
173 |
Q |
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| T |
54704090 |
gaagtcaataccttgacggcggagcatgtcaatggaatcttggttgtgaatgtcgcgcccgatcttaaagtcacaaaagttgaattcccatatgcaacaa |
54704189 |
T |
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| Q |
174 |
ttgttctcatcactagggaggttaccaattgcatccgataaggtaagaccgatctgaatgatgtttagagcatcaacgttggctttcaagtaactgtatt |
273 |
Q |
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| T |
54704190 |
atgtttttaaaacgaggaatgttacctttggcatcggttaaagtgagaccgatctgaatgattttaagagcatcaacatttgatttcaaataactgtatt |
54704289 |
T |
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| Q |
274 |
gctcgttaggttggaggcgacggcg---gactgtgggtgaatgaacaattccaggaaattcagtgtccattgagatgaaattgtatttaccaattaactg |
370 |
Q |
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| T |
54704290 |
gttcgtaaggttggagatgacggtggtcgactttgagtggaaaaataacgccaggaaattcagtatccattgagatgaaattgtatgttccaacaaatcc |
54704389 |
T |
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| Q |
371 |
actaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcatgattggttttgaactaggctcttccttcatcat |
457 |
Q |
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| T |
54704390 |
acgaatgagattgaattcctcttgcagattgtgtgcccaaacttcacgtatcatgattggttctgaactaggatcttccttcgtcat |
54704476 |
T |
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