View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11157_high_6 (Length: 233)
Name: NF11157_high_6
Description: NF11157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11157_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 30718240 - 30718099
Alignment:
| Q |
1 |
tcaacgggaatggcaatggtaccacacgcaatctccacgaagaagcgaccagcaaagaacgagaagatctgcctcgaagattatattcatcttcttctct |
100 |
Q |
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| T |
30718240 |
tcaacgggaatggcaatggtaccacacgcaatctccacgaagaagcgaccagcaaagaacgagaagatctgcctcgaagattacattcatcttcttcact |
30718141 |
T |
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| Q |
101 |
ctcaccacaccgttgatctcaccatgaatcaactcaatcagg |
142 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30718140 |
ctcgccacaccgttgatctcaccatgaatcaactcaatcagg |
30718099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 30894069 - 30894210
Alignment:
| Q |
1 |
tcaacgggaatggcaatggtaccacacgcaatctccacgaagaagcgaccagcaaagaacgagaagatctgcctcgaagattatattcatcttcttctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||||| || |
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| T |
30894069 |
tcaacgggaatggcaatggtaccacacgcaatctcctcgaagaagcgttcagcaaagaacgaaaagctctgcctcgaagattacattcatcttcttcact |
30894168 |
T |
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| Q |
101 |
ctcaccacaccgttgatctcaccatgaatcaactcaatcagg |
142 |
Q |
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||| | ||||| ||||||||| ||||||||||||||||||| |
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| T |
30894169 |
ctcgcaacaccaatgatctcactatgaatcaactcaatcagg |
30894210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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