View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11158_low_1 (Length: 575)
Name: NF11158_low_1
Description: NF11158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11158_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 566
Target Start/End: Complemental strand, 41750587 - 41750026
Alignment:
| Q |
7 |
tacgtacgtacatacatacagatgaaattgaaggttccattagcctatcgaccgtttatccaatctttcatctataatcttcatacat---gtgtgagta |
103 |
Q |
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| T |
41750587 |
tacgtacatacatacatacagatgaaat-gaaggttccattagcctatcgaccgtttatccaatctttcatctataatcttcatacatattgtgtgtgta |
41750489 |
T |
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| Q |
104 |
atgagacagtaaataaatcttatctttctttttatttgaatttagcctatcagtttttccaaccatgcattcatctaatcgttcgtaccttaaatgcaca |
203 |
Q |
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| T |
41750488 |
atgagagagtaa-taaatcttatctttctttttatttgaatttagcctatcagtttttccaaccat----tcatctaatcgttcgtaccttaaatgcaca |
41750394 |
T |
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| Q |
204 |
tgttcattcatgtgtatccttaaagtagaaataatgctcaattagacgtattgttttttcactatcgaacgatcaatttatatatat--ttgatatttct |
301 |
Q |
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| T |
41750393 |
tgttcattcatgtgtatccttaaagtagaaataatgctcaattagacgtattgttttttcactatcgaacgatcaatttatatatatatttgatatttct |
41750294 |
T |
|
| Q |
302 |
aattaaaagtgcaattttagtgcattatcat---gtcaacgcttatgatgcatatttcctacactcttaattaagtgtaacgtatacgctatcattgacg |
398 |
Q |
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| T |
41750293 |
aattaaaagtgcaattttagtgcattatcatcatgtcaacgcttatgatgcatatttcctacactcttaattaagtttaacgtatacgttatcattgacg |
41750194 |
T |
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| Q |
399 |
acatacggtgatacgacatgatcattttagagtagtatttatacgtattctacatgcatgtgaaatcacccaatacatgcactaatactatactatacac |
498 |
Q |
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| T |
41750193 |
acatacggtgatacgacatgatcattttagagtagtatttatacgtattctacatgcatgtgaaatcacccaatacatgcactaatactatactatacac |
41750094 |
T |
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| Q |
499 |
ttactaattcatcattcatcaatgacgaaacaaactcctctaatcaccaggcttctctctctgcttct |
566 |
Q |
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| T |
41750093 |
ttactaattcatcattcatcaatgacgaaacaaactcctctaatcaccaggcttctctctttgcttct |
41750026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 328 - 490
Target Start/End: Complemental strand, 41756936 - 41756775
Alignment:
| Q |
328 |
atcatgtcaacgcttatgatgcatatttcctacactcttaattaagtgtaacgtatacgctatcattgacgacatacggtgatacgacatgatcatttta |
427 |
Q |
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| T |
41756936 |
atcatgtcagcgcttatgatgcatatttcctacacacttaattaactgtaacgtatacgttatcattaacgatatacggtgatacgacatgatcatttta |
41756837 |
T |
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| Q |
428 |
gagtagtatttatacgtattctacatgcatgtgaaatcacccaatacatgcactaatactata |
490 |
Q |
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| T |
41756836 |
gagtagtatttatacgtattctacatgcgtgtg-aatcacccaatacatgcactaatactata |
41756775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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