View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11158_low_3 (Length: 354)
Name: NF11158_low_3
Description: NF11158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11158_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 1140640 - 1140980
Alignment:
| Q |
14 |
gaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaa |
113 |
Q |
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| T |
1140640 |
gaactataagattttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcaggaggtaaagtggggtgaaaatagcatgatagaa |
1140739 |
T |
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| Q |
114 |
gcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaa |
213 |
Q |
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| T |
1140740 |
gcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaa |
1140839 |
T |
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| Q |
214 |
tctacacttatctaatgaactcaaaacaaacatttgtggaaggaattgatataccaagagatgtaggacgtggaagatataaccgtagaatgacaccatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
1140840 |
tctacacttatctaatgaactcaaaacaaacatttgtggaagcaattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgagaccatt |
1140939 |
T |
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| Q |
314 |
gattcaactttcacaatggagtaaaggggctcaatggttcc |
354 |
Q |
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| T |
1140940 |
gattcaactttcacaatggagaaaaggggctcaatggttcc |
1140980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 1137177 - 1137519
Alignment:
| Q |
12 |
atgaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatag |
111 |
Q |
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| T |
1137177 |
atgaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatag |
1137276 |
T |
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| Q |
112 |
aagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccac |
211 |
Q |
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| T |
1137277 |
aagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtcctactttcagaacattgcataccattgttcaatttcttcac |
1137376 |
T |
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| Q |
212 |
aatctacacttatctaatgaactcaaaacaaacatttgtggaaggaattgatataccaagagatgtaggacgtggaagatataaccgtagaatgacacca |
311 |
Q |
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| T |
1137377 |
aatctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgtgtcca |
1137476 |
T |
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| Q |
312 |
ttgattcaactttcacaatggagtaaaggggctcaatggttcc |
354 |
Q |
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| T |
1137477 |
ttgattcaactttcacaatggagaaaaggggctcaatggttcc |
1137519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 22841770 - 22841664
Alignment:
| Q |
129 |
ctagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaa |
228 |
Q |
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| T |
22841770 |
ctagcaaacgcgcttctcgatttctcaaaccaacgattcgttctcatatcagaatcatgcataccactcttcaacttctcaacagtctactcttatctaa |
22841671 |
T |
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| Q |
229 |
tgaactc |
235 |
Q |
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| T |
22841670 |
tgaactc |
22841664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 74 - 352
Target Start/End: Complemental strand, 54474869 - 54474591
Alignment:
| Q |
74 |
catgcagaaggtaaagtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtacta |
173 |
Q |
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||||||| |||||||||||||||| |||||||||||||| || || | ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
54474869 |
catgcaggaggtaaagtggggtgagaatagcatgatagaggctgagaaacgtctactagcaaatgcattgctcgatttctcaaaccaacgttttgtacta |
54474770 |
T |
|
| Q |
174 |
ctttcagaacattgcataccattgttcaatttctccacaatctacacttatctaatgaactcaaaacaaacatttgtggaaggaattgatataccaagag |
273 |
Q |
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| T |
54474769 |
ctttcagaatcatgcataccattgttcaatttctccacaatatacacttatctaatgaactcaagactatcatttgtggaagctaatgatatccgaggtg |
54474670 |
T |
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| Q |
274 |
atgtaggacgtggaagatataaccgtagaatgacaccattgattcaactttcacaatggagtaaaggggctcaatggtt |
352 |
Q |
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| T |
54474669 |
cacaaggacgtggaagatacaactaccgaatgaggccattgattgaactttcacaatggagaaaagggtctcaatggtt |
54474591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 45 - 352
Target Start/End: Complemental strand, 31266948 - 31266642
Alignment:
| Q |
45 |
aaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgc |
144 |
Q |
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| T |
31266948 |
aaagccaaaatttatgattttcttttgtt-atgcaggaagtaaagtggggtgagaatagcatgatagaagcagaaagacgtttactagcaaatgcattgc |
31266850 |
T |
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| Q |
145 |
ttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaatgaactcaaaacaaac |
244 |
Q |
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| T |
31266849 |
ttgatttctcaaaccaacgttttgtactactttcagaatcatgcataccattgttcaatttctctacaatctacacttacctaatgaactcagagaaaac |
31266750 |
T |
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| Q |
245 |
atttgtggaaggaattgatataccaagagatgtaggacgtggaagatataaccgtagaatgacaccattgattcaactttcacaatggagtaaaggggct |
344 |
Q |
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| T |
31266749 |
ctttgtggaagcctatgacctagaaggtgccgttggacgtggtagatacaactataaaatgagtccattgattaaactttcacaatggagaaaagggtca |
31266650 |
T |
|
| Q |
345 |
caatggtt |
352 |
Q |
| |
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|||||||| |
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| T |
31266649 |
caatggtt |
31266642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 48323731 - 48323543
Alignment:
| Q |
67 |
tattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttt |
166 |
Q |
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||||||| |||||| |||||||||||||||| | |||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||||| | || |
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| T |
48323731 |
tattgttgatgcaggaggtaaagtggggtgagactagcatgatagaggcagagaggcgtctactagcaaatgcattgcttgatttctcaaaccaaagatt |
48323632 |
T |
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| Q |
167 |
tgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaatgaactcaaaacaaacatttgtggaag |
255 |
Q |
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| T |
48323631 |
tgtactactttcagaatcatgtataccattgttcaatttctccacaatttatacttatctaatgaactcaaatgaaacctttgtggaag |
48323543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 395619 - 395573
Alignment:
| Q |
136 |
atgcactgcttgatttctcaaaccaacgttttgtactactttcagaa |
182 |
Q |
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||||||| |||||||| ||||||||||||||| |||||||||||||| |
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| T |
395619 |
atgcactacttgatttatcaaaccaacgttttatactactttcagaa |
395573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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