View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11158_low_4 (Length: 204)
Name: NF11158_low_4
Description: NF11158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11158_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 29341006 - 29341174
Alignment:
| Q |
14 |
cagagacaaaaaccttaaacctacactataaataatagagaccaaaaccataaacctacactataaataataattcaagggcattgaatcatat-acgca |
112 |
Q |
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| T |
29341006 |
cagagaccaaaaccttaaacctacactgtaaataatagagaccaaaaccataaaccta-actataaataataattcaagggcattgaatcatataacgca |
29341104 |
T |
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| Q |
113 |
tacattttaccctaagtcacttcctaaatccacaatgcttactaacttgagtgtttgagtgtctttacat |
182 |
Q |
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| T |
29341105 |
atcattttaccttaaatcacctcctacatccacaatgcttactaacttgagcatttgagtgtatttacat |
29341174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 29357080 - 29357213
Alignment:
| Q |
50 |
agagaccaaaaccataaacctacactataaataataattcaagggcattgaatcatatacgcatacattttaccctaagtcacttcctaaatccacaatg |
149 |
Q |
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| T |
29357080 |
agagactaaaaccctaaacctaccctataaataataactcaagggcattgactcaaatacacatacattttaccctaaatcacctcctagatccacaatg |
29357179 |
T |
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| Q |
150 |
-cttactaacttgagtgtttgagtgtctttacat |
182 |
Q |
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| T |
29357180 |
ttttacaaacttgagtgtttgagtgtctttacat |
29357213 |
T |
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