View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_10 (Length: 326)
Name: NF11159_low_10
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 141 - 320
Target Start/End: Original strand, 24181374 - 24181553
Alignment:
| Q |
141 |
gtggtccaattagtcaaagcacaagcccaagtcaaagtacaagcccaagtcatagcccaagtccaatttcaagcccatcatcaccaccaccactctcaca |
240 |
Q |
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| T |
24181374 |
gtggtccaattagtcaaagcacaagcccaagtcaaagtacaagcccaagtcatagcccaagtccaatttcaagcccatcatcaccaccaccactctcaca |
24181473 |
T |
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| Q |
241 |
tttaccaccttcttatcatcactcttcagctcctcacatgcttttagctcttggtggaaatgcttattcaacaccaccac |
320 |
Q |
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| T |
24181474 |
tttaccaccttcttatcatcactcttcagctcctcacatgcttttagctcttggtggaaatgcttattcaacaccaccac |
24181553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24181234 - 24181310
Alignment:
| Q |
1 |
cctcaccacgcccccttccaccaccgctacggcaacagccagcgcgaaaaacagtcccccttttcttaactgtatct |
77 |
Q |
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| T |
24181234 |
cctcaccacgaccacttccaccaccgctacggcaacagccagcgcgaaaaacagtccaccttttcttaactgtatct |
24181310 |
T |
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