View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_13 (Length: 307)
Name: NF11159_low_13
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 33387994 - 33387713
Alignment:
| Q |
8 |
caatgaggatccatcttggtgctatgaaaactttgttaatcacagggcgctgaaatcagctgataatgttcgacaacagctagtgcgaatcatggctcgg |
107 |
Q |
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| T |
33387994 |
caatgaggatccatcttggtgctatgaaaactttgttaatcacagggcgctgaaatcagctgataatgttcgacaacagctagtgcgaatcatggctcgg |
33387895 |
T |
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| Q |
108 |
tttaacctgaagttatgcagcacttacttcaatagtcgcgactactatgtcaacattaaaaaggcaatgctagcaggatacttcatgcaggtggctcatc |
207 |
Q |
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| T |
33387894 |
tttaacctgaagttatgcagcacttacttcaatagtcgcgactactatgtcaacattaaaaaggcaatgctagcaggatacttcatgcaggtggctcatc |
33387795 |
T |
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| Q |
208 |
ttgagcggacaggacactacttgacagtgaaagataaccagatggtacaattgcatccatcaaattgcctggaccacaagcc |
289 |
Q |
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| T |
33387794 |
ttgagcggacaggacactacttgacagtgaaagataaccagatggtacaattgcatccatcaaattgcctggaccccaagcc |
33387713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 38778513 - 38778277
Alignment:
| Q |
12 |
gaggatccatcttggtgctatgaaaactttgttaatcacagggcgctgaaatcagctgataatgttcgacaacagctagtgcgaatcatggctcggttta |
111 |
Q |
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| T |
38778513 |
gaggatgcttcttggtgctacgacaacttcgttaataatagggcgcttaaatcagctgataatgttcgacaacagctagtgcgtatcatggctaggttta |
38778414 |
T |
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| Q |
112 |
acctgaagttatgcagcacttacttcaatagtcgcgactactatgtcaacattaaaaaggcaatgctagcaggatacttcatgcaggtggctcatcttga |
211 |
Q |
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| T |
38778413 |
acctgaagttatgcagcactgacttcaatagtcgcgactactacgtcaacataagaaaggcaatgttagcaggatatttcatgcaggtggctcatcttga |
38778314 |
T |
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| Q |
212 |
gcggacaggacactacttgacagtgaaagataaccag |
248 |
Q |
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| T |
38778313 |
gcggacaggacactacttgacagttaaagacaaccag |
38778277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 38778164 - 38778125
Alignment:
| Q |
250 |
tggtacaattgcatccatcaaattgcctggaccacaagcc |
289 |
Q |
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| T |
38778164 |
tggtacacttgcatccatcaaattgtctggaccacaagcc |
38778125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 20817114 - 20817397
Alignment:
| Q |
12 |
gaggatccatcttggtgctatgaaaactttgttaatcacagggcgctgaaatcagctgataatgttcgacaacagctagtgcgaatcatggctcggttta |
111 |
Q |
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| T |
20817114 |
gaggatgcttcttggtgctacgacaactttattaattatagggtgttgaaatcagctgataatgttcgacaacagctagtgcgtatcatggctcggttta |
20817213 |
T |
|
| Q |
112 |
acctgaagttatgcagcacttacttcaatagtcgcgactactatgtcaacattaaaaaggcaatgctagcaggatacttcatgcaggtggctcatcttg- |
210 |
Q |
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| T |
20817214 |
atctgaagttatgcagcactgacttcaatagtcgccactactacgtcaacataagaaagacaatgctagcaggatatttcatgcaggtggctcattttga |
20817313 |
T |
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| Q |
211 |
--agcggacaggacactacttgacagtgaaagataaccagatggtacaattgcatccatcaaattgcctggaccacaagcctga |
292 |
Q |
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||| || ||||| |||||||||||| ||||| || ||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
20817314 |
tcagcagagaggacgctacttgacagttaaagacaagcaggaagtatacttgcatccatcaaattgcctggaccacaagcctga |
20817397 |
T |
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