View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_15 (Length: 265)
Name: NF11159_low_15
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 20348285 - 20348415
Alignment:
| Q |
29 |
ctacaattagatgatgaggtgcacatgtgtattagtgatgcttaggtgtgtaatacattaaatgaagtttaacatataaaaatgccaattgtattcttca |
128 |
Q |
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| T |
20348285 |
ctacaattagatgatgaggtgtacatttgtattagtgatgcttaagtgtgtaatacattaaataaagttttacataaaagagtgccaagtgtactcttca |
20348384 |
T |
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| Q |
129 |
aaatcatgaagtcaaatgtttataatagaga |
159 |
Q |
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| T |
20348385 |
aaaaaattaaggcaaatgtttataatagaga |
20348415 |
T |
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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 26442818 - 26442689
Alignment:
| Q |
33 |
aattagatgatgaggtgcacatgtgtattagtgatgcttaggtgtgtaatacattaaatgaagtttaacatataaaaatgccaattgtattcttcaaaat |
132 |
Q |
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| T |
26442818 |
aattagatgatgaggtgcacatgtgtattggtgatgcctaggtgtgtaatacattaaatgaagttttacatagaagagtaccaagtgtactcttcaaaaa |
26442719 |
T |
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| Q |
133 |
catgaagtcaaatgtttataatagagatag |
162 |
Q |
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| T |
26442718 |
aattaaggcaaatatatataataaagatag |
26442689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 2949778 - 2949862
Alignment:
| Q |
165 |
atttttctcataaacaatagcattaattcatgtagccatcttaggctacattaagccaccaccttgctctctatgattccattga |
249 |
Q |
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| T |
2949778 |
atttttctcataaacgatagcattaatccattaagccaccttaggctacattaagccaccaccttgctctctatgattccattga |
2949862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 2981666 - 2981707
Alignment:
| Q |
214 |
attaagccaccaccttgctctctatgattccattgacctatg |
255 |
Q |
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| T |
2981666 |
attaagccaccaccttgctctctatgattccattgacctatg |
2981707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 2981414 - 2981456
Alignment:
| Q |
165 |
atttttctcataaacaatagcattaattcatgtagccatctta |
207 |
Q |
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| T |
2981414 |
atttttctcataaacaatagcattaatccatttagccatctta |
2981456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3028508 - 3028548
Alignment:
| Q |
174 |
ataaacaatagcattaattcatgtagccatcttaggctaca |
214 |
Q |
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| T |
3028508 |
ataaacaatagcattaatccatttagccatcttaggctaca |
3028548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 37242641 - 37242515
Alignment:
| Q |
34 |
attagatgatgaggtgcacatgtgtattagtgatgcttaggtgtgtaatacattaaatgaagtttaacatataaaaatgccaattgtattcttcaaaatc |
133 |
Q |
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| T |
37242641 |
attagatgataaggtgcacatgtgtattggtgatgcctgggtgtgtaatacattaaatgaagttttacatagaagagtgccaagtgtactcttcaaaaaa |
37242542 |
T |
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| Q |
134 |
atgaagtcaaatgtttataatagagat |
160 |
Q |
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| T |
37242541 |
attaaggcaaatatatataataaagat |
37242515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 26781861 - 26781894
Alignment:
| Q |
35 |
ttagatgatgaggtgcacatgtgtattagtgatg |
68 |
Q |
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| T |
26781861 |
ttagatgatgaggtgcacacgtgtattagtgatg |
26781894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 287312 - 287252
Alignment:
| Q |
107 |
aaaatgccaattgtattcttcaaaatcatgaagtcaaatgtttataatagagatagagatt |
167 |
Q |
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| T |
287312 |
aaaatgccatgtgtacttttcaaaaaaattaaggcaaatgtttataatagagatagagatt |
287252 |
T |
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