View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_16 (Length: 252)
Name: NF11159_low_16
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 4104 - 3863
Alignment:
| Q |
11 |
cagagacggtagatgagttcttgnnnnnnnncgatctcgatcttatatgtcgggctcatcaggttaattttgttattcactactacactacacattgatc |
110 |
Q |
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| T |
4104 |
cagacacggtagatgagttcttgaagaaaaacgatctcgatcttatatgtcgggctcatcaggttaattttgttattcaccactacactacacattgatc |
4005 |
T |
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| Q |
111 |
attcattcatttatccattattgaataaactaaacaaacttattgtaaatttactcatacaggttgttgaagacggctaccaattcttcgcagacagaca |
210 |
Q |
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| T |
4004 |
attcattcatttatccattattgaataaactaaacaaacttattgtaaatttactcatacaggttgttgaagacggctaccaattcttcgcagacagaca |
3905 |
T |
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| Q |
211 |
actagttacaatattttcagcaccaaattattgtggagagtt |
252 |
Q |
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| T |
3904 |
actagttacaatattttcagcaccaaattattgtggagagtt |
3863 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 34787568 - 34787614
Alignment:
| Q |
200 |
gcagacagacaactagttacaatattttcagcaccaaattattgtgg |
246 |
Q |
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| T |
34787568 |
gcagacagacaacttgttacaatattttcagctccaaactactgtgg |
34787614 |
T |
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