View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_18 (Length: 240)
Name: NF11159_low_18
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 5795603 - 5795829
Alignment:
| Q |
26 |
atggtaagtcgatgacattacaacccc-taacaaagtgtgacttattacgaaagaatctataaatcatttaaatgta--------------atattgagt |
110 |
Q |
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| T |
5795603 |
atggtaagtcgatgacattacaaccccctaacaaagtgtgacttattacaaaagaatctataaatcttttaaatgtacaaagcaataagtaatattgagt |
5795702 |
T |
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| Q |
111 |
cagtatggaaaacggtttaaagacagtgcatgttacctcaaaaataaatggtgactaactaactatatatacac-ttgctttctcatctctagtaattat |
209 |
Q |
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| T |
5795703 |
cactatggaaaacggtttaaagacagtgcatgttacctcaaaaat-aatggtgactatctaactatatatacactttgctttctcatctctagtaattat |
5795801 |
T |
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| Q |
210 |
tcctttttaattatcatgttccttctct |
237 |
Q |
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| T |
5795802 |
tcctttttaattatcatgttccttctct |
5795829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 5815286 - 5815165
Alignment:
| Q |
101 |
aatattgagtcagtatggaaaacggtttaaagacagtgcatgttacctcaaaaataaatggtgactaactaactatatatacacttgctttctcatctct |
200 |
Q |
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| T |
5815286 |
aatattgagtcactatgaaaaatggtgtaaagacggtacatattacctcaaagataaatggtgactaatta----tatatgcacttgctttctcatctct |
5815191 |
T |
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| Q |
201 |
agtaattattcctttttaattatcat |
226 |
Q |
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| T |
5815190 |
agtaataattcctttttaattatcat |
5815165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 5778049 - 5778112
Alignment:
| Q |
177 |
atatacacttgctttctcatctctagtaatt---attcctttttaattatcatgttccttctct |
237 |
Q |
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| T |
5778049 |
atatacacttgctttctcatctctagtaatttttattcctttttaattatcatgttccttctct |
5778112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 5772415 - 5772478
Alignment:
| Q |
177 |
atatacacttgctttctcatctctagta---attattcctttttaattatcatgttccttctct |
237 |
Q |
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| T |
5772415 |
atatacacttgctttctcatctctagtaattattattcttttttaattatcatgttccttctct |
5772478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 5797740 - 5797677
Alignment:
| Q |
177 |
atatacacttgctttctcatctctagtaattatt---cctttttaattatcatgttccttctct |
237 |
Q |
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| T |
5797740 |
atatatacttgctttctcatctctagtaattattattcctttttaattatcatgttccttctct |
5797677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 5777947 - 5778000
Alignment:
| Q |
24 |
tgatggtaagtcgatgacattacaacccctaacaaagtgtgacttattacgaaa |
77 |
Q |
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| T |
5777947 |
tgatggtgagtcgatgacattacaaccccaaacaaagtgtgacttattatgaaa |
5778000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 5797881 - 5797816
Alignment:
| Q |
17 |
aaattattgatggtaagtcgatgacattacaacccc-taacaaagtgtgacttattacgaaagaat |
81 |
Q |
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| T |
5797881 |
aaattagtgatggtgagtcgatgacattgcaaccccctaacaaagtgtgacttataatgaaagaat |
5797816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 5772328 - 5772377
Alignment:
| Q |
32 |
agtcgatgacattacaacccctaacaaagtgtgacttattacgaaagaat |
81 |
Q |
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| T |
5772328 |
agtcaatgacattgcaacccctaataaagtgtgacttattatgaaagaat |
5772377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 5815377 - 5815319
Alignment:
| Q |
24 |
tgatggtaagtcgatgacattacaaccc-ctaacaaagtgtgacttattacgaaagaat |
81 |
Q |
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| T |
5815377 |
tgatggtgagtcgataacattgcaaccctctaataaagtgtgacttattatgaaagaat |
5815319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 5815721 - 5815658
Alignment:
| Q |
38 |
tgacattacaaccc-ctaacaaagtgtgacttattacgaaagaatctataaatcatttaaatgta |
101 |
Q |
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| T |
5815721 |
tgacattgcaacccactaacaaagtgtgacgtattatgaaagaatgtatatatc-tttaaatgta |
5815658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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