View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_2 (Length: 656)
Name: NF11159_low_2
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Complemental strand, 34747525 - 34746894
Alignment:
| Q |
1 |
aagattaaactaaacaaacaaaagaaaatggagacttgacaaatagaactagcaatatgctcatttccaaagcaacaaaaaaatagaaatattcatacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34747525 |
aagattaaactaaacaaacaaaagaaaatggagacttgacaaatagaaatagcaatatgctcatttccaaaacaacaaaaaaatagaaatattcatacaa |
34747426 |
T |
|
| Q |
101 |
gtactacagaaagnnnnnnnnnn--tgcatacaagaatcttcaaattaaccaagtactacaatttagcacagccatgcttgctcactcatgcccttcatg |
198 |
Q |
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| T |
34747425 |
gtactacagaaagaaaaaaaaaacatgcatacaagaatcttcaaattaaccaagtactacaatttagcacagccatgcttgctcactcatgtccttcatg |
34747326 |
T |
|
| Q |
199 |
agaaagaagactcactcaaacaaagtaatttgaaagataagtagattatagtataaaccatacataaccaacttggtcaagaaagtgtgtgtgtgcgtga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
34747325 |
agaaagaagactcactcaaacaaagtaatttgaaagataagtagattatagtataaaccatacataaccaacttggtcaaaaaagtgtgtgcgtgcg--- |
34747229 |
T |
|
| Q |
299 |
gcgcgtgtatgagatttttgttggtgaacagatcgatgtatatccgtgcacaactgcggagactgaattctcaaggtcaagaggactgatgtgagactta |
398 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34747228 |
-cgcgtgtatgagatttttgttggtgaacagat----gtatatccgtgcacaactgcggagactgaattctcaaggtcaagaggaccgatgtgagactta |
34747134 |
T |
|
| Q |
399 |
ccggtgattagagcggttagaccggaaggaaggaaagaagagcaattttgagtaacctgttctgctgttgaatttgagccaaaaccactaggccctgcaa |
498 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34747133 |
ccagtgattagagcggttagaccggaaggaaggaaagaagagcaattttgagtaacttgttctgctgttgaatttgaaccaaaaccactaggccctgcaa |
34747034 |
T |
|
| Q |
499 |
ttcctgctaagtatctcaatgttgccttcatggaagggctttacctgttttacaatattattattattgcaaggacaaaaatagcatttgagaatatatt |
598 |
Q |
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| T |
34747033 |
ttcctgctaagtatctcaatgttgccttcatggaagggctttacctgttttacaatattattattattgcaaggacaaaaatagcatttgagaatatatt |
34746934 |
T |
|
| Q |
599 |
gagggtgggtgggactcaaaccaaaccatatacttatata |
638 |
Q |
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| T |
34746933 |
gagggtgggtgggactcaaaccaaaccatatacttatata |
34746894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 436 - 505
Target Start/End: Complemental strand, 43689229 - 43689160
Alignment:
| Q |
436 |
aagagcaattttgagtaacctgttctgctgttgaatttgagccaaaaccactaggccctgcaattcctgc |
505 |
Q |
| |
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||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43689229 |
aagagcaatgttgagtgacttgttctgcagttgaatttgagccaaaaccactaggccctgcaatgcctgc |
43689160 |
T |
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