View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_20 (Length: 239)
Name: NF11159_low_20
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 239
Target Start/End: Original strand, 45057941 - 45058102
Alignment:
| Q |
84 |
taagccatcttctctcttttcctccaaaatcttaaatctagacgtacctttattatccatccaactcataaacaaaaatattttggatt--------tgt |
175 |
Q |
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| T |
45057941 |
taagccatcttctctctttacctccaaaatcttaaat--agacgtacctttattatccatccaactcataaacaaaaatattttggattcatttaactgt |
45058038 |
T |
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| Q |
176 |
aaaaataaccacgtttttctctattgaaatttagtgtccaaagcatgggcaatagaggactaat |
239 |
Q |
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| T |
45058039 |
aaaaataaccacgtttttctctattgaaatttagtgtccaaagcatgggcaatagaggactaat |
45058102 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 45057526 - 45057442
Alignment:
| Q |
84 |
taagccatcttctctcttttcctccaaaatcttaaatctagacgtacctttattatccatccaactcataaacaaaaatattttggatt |
172 |
Q |
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| T |
45057526 |
taagccatcttctctccttccctccaaaatcttcaatcaagacgcacctttatta----tccaactcataaacaaaaatattttggatt |
45057442 |
T |
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