View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_21 (Length: 229)
Name: NF11159_low_21
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_21 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 35817552 - 35817330
Alignment:
| Q |
7 |
ttcattacctttatctaggtcatccatcagaaaccaaagaaaactttggatgaaataagccatgacttgtgttgatgactgcagattcaaataatgcaga |
106 |
Q |
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| T |
35817552 |
ttcattacctttatttaggtcatccatcagaaaccaaagaaaacttcggatgaaataagccatgacttgtgttgatgactgcagattcaaataatgcaga |
35817453 |
T |
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| Q |
107 |
aaaactatgttgatctttttcttatcaatgttttcttctaggtcatttccaatatgtgagtgttgatgactgaagattcaaataatgcaattagtaattc |
206 |
Q |
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| T |
35817452 |
aaaactatgttgatctttttcttatcaatgttttcttctaggtcatttccaatatgtgagtgttgatgactgaagattcaaataatgcaattagtaattc |
35817353 |
T |
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| Q |
207 |
tttcttgttggataatgattcaa |
229 |
Q |
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| T |
35817352 |
tttcttgttggataatgattcaa |
35817330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 47704058 - 47704181
Alignment:
| Q |
106 |
aaaaactatgttgatctttttcttatcaatgttttcttctaggtcatttccaatatgtgagtgttgatgactgaagattcaaataatgcaattagtaatt |
205 |
Q |
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| T |
47704058 |
aaaaactatgttgagctttgccgtataaatgttttcatgtaggtaatatccaatatgcgagtgctgatgactgaagattcaaataatgcagttagtaatt |
47704157 |
T |
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| Q |
206 |
ctttcttgttggataatgattcaa |
229 |
Q |
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| T |
47704158 |
ctttcctgttggatgatgattcaa |
47704181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 47703726 - 47703782
Alignment:
| Q |
22 |
taggtcatccatcagaaaccaaagaaaactttggatgaaataagccatgacttgtgt |
78 |
Q |
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| T |
47703726 |
taggtcatacatcaaaaaccaaagaaaacgttggacgaaataagtcatgacctgtgt |
47703782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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