View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11159_low_22 (Length: 228)
Name: NF11159_low_22
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 5795060 - 5795256
Alignment:
| Q |
6 |
agattgatgggtagtcatcatagatttatatttattagagaaaaataacggatagggttgcagatcaaatcaggattaggaggcatatcagtaagatgtc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5795060 |
agattgatgggtagtcatcatagatttatatttattagagaaaaataacggatagggttgcagatcaaatcaggattaggaggcatatcagtaagatgtc |
5795159 |
T |
|
| Q |
106 |
aagtgttgttagctcctaaagcatcaagttcaaccgcaatgaatataaaatatacattacgagttaaaagaaattacaatgagcgttaatatttagga |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5795160 |
aagtgttgttagcttctaaagcatcaagttcaaccgcaataaatataaaatatacattacgagtt-aaagaaattacaatgagtgttaatatttagga |
5795256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 5827667 - 5827844
Alignment:
| Q |
36 |
tttattagagaaaaataacggatagggttgcagatcaaatcaggattaggagg-----catatcagtaagatgtcaagtgttgttagctcctaaagcatc |
130 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| ||||||| | |||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
5827667 |
tttattagagaaaaataacatataggattgcagatcaaatcagtattaggaagcatatcatatcagtaggatttcaagtgttgttagcttctaaagcatt |
5827766 |
T |
|
| Q |
131 |
aagttcaacc------gcaatgaatataaaatatacattacgagttaaaagaaattacaatgagcgttaatatttagga |
203 |
Q |
| |
|
|||||||||| ||||||||| | | ||| ||||||||| || || ||||| |||||| | |||||||||||||| |
|
|
| T |
5827767 |
aagttcaaccttcattgcaatgaatttgacatagacattacga-tttaaggaaataacaatgtgtgttaatatttagga |
5827844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 5793170 - 5793269
Alignment:
| Q |
108 |
gtgttgttagctcctaaagcatcaagttcaacc------gcaatgaatataaaatatacattacgagttaaaagaaattacaatgagcgttaatatttag |
201 |
Q |
| |
|
|||||||||||| |||||| || |||||||||| ||||||||||||||||| ||||||| |||| || |||||||||||| | |||||||||||| |
|
|
| T |
5793170 |
gtgttgttagcttctaaagtattaagttcaaccttcattgcaatgaatataaaatagacattacaagtt-aaggaaattacaatgtgtgttaatatttag |
5793268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University