View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_23 (Length: 210)
Name: NF11159_low_23
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_23 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 32456375 - 32456197
Alignment:
| Q |
16 |
agagaatgggataggtttccggcgacggagagggcgaggatgaaggcaaggcaaggtgtgaggagggtcggggtggcggaggttgatgtagtgggatcca |
115 |
Q |
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| T |
32456375 |
agagaatgggataggtttccggcaacggagaaggcgaggatgaaggcgaggcaaggtgtgaggaaggtgggggtggcggaggttgatgtggtgggaccca |
32456276 |
T |
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| Q |
116 |
ctggagaaagtgtgaagcatgatggtgtaaccgttggtgagatcgttgtaaacggtgcatgtgtcatgttaggttattt |
194 |
Q |
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| T |
32456275 |
ctggtgaaagtgtgaagaatgatggtgtaaccgttggtgagatcgttgtaaaaggtgcatgtgttatgttaggttattt |
32456197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 32464760 - 32464939
Alignment:
| Q |
16 |
agagaatgggataggtttccggcgacggagagggcgaggatgaaggcaaggcaaggtgtgaggagggtcggggtggcggaggttgatgtagtgggatcca |
115 |
Q |
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| T |
32464760 |
agagaatgggataggtttccggcgacggagagggcgaggatgaaggcaaggcaaggtgtgaggagggtgggggtggcggaggttgatgtggtcggaccca |
32464859 |
T |
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| Q |
116 |
ctggagaaagtgtgaagcatgatggtgtaaccgttggtgagatcgttgtaaacggtgcatgtgtcatgttaggttattta |
195 |
Q |
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| T |
32464860 |
ctggtgaaagtgtaaagaatgatggtgtaacggttggtgaaatcgttgtaaaaggtgcttgtgttatgcttggttattta |
32464939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 24193 - 24365
Alignment:
| Q |
19 |
gaatgggataggtttccggcgacggagagggcgaggatgaaggcaaggcaaggtgtgaggagggtcggggtggcggaggttgatgtagtgggatccactg |
118 |
Q |
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| T |
24193 |
gaatgggataggtttccggcgacggggaaggcgaggatgaaggcgaggcaaggtgtgagaagggtgggtgtgacggaggttgatgtggtgggacccaccg |
24292 |
T |
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| Q |
119 |
gagaaagtgtgaagcatgatggtgtaaccgttggtgagatcgttgtaaacggtgcatgtgtcatgttaggtta |
191 |
Q |
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| T |
24293 |
gagaaagtgtgaagcacgatggtataacggctggtgagatagttgtaaaaggtgcttgtgttatgttaggtta |
24365 |
T |
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