View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_4 (Length: 548)
Name: NF11159_low_4
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_4 |
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| [»] scaffold0097 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 48483746 - 48484270
Alignment:
| Q |
18 |
gttagtacgtgattgagtcaagccaatcatgatatgaatggaaaattgcatatttctcactgaagaattattgcggtggatccataagttactacttcct |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483746 |
gttagtacgtgatcgagtcaagccaatcatgatatgaatggaaaattgcatatttctcactgaagaattattgcggtggatccataagttactacttcct |
48483845 |
T |
|
| Q |
118 |
gaagaatttgatataatgtaataatacagcaaaaacagtcagaccaaagaaaagattaaatgtagatgacatgccttttactggacagaggcagcactct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483846 |
gaagaatttgatataatgtaataatacagcaaaaacagtcagaccaaagaaaagattaaatgtagatgacatgccttttactggacagaggcagcactct |
48483945 |
T |
|
| Q |
218 |
ctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtgaacagcaacttggcatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483946 |
ctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtgaacagcaacttggcatc |
48484045 |
T |
|
| Q |
318 |
tgcaaatgaactgcaacttagcactcttgatgcacgtgaagtaattcatttttgatcctttaaagttttgtaaatcagaaagagaatttcaaaatatctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484046 |
tgcaaatgaactgcaacttagcactcttgatgcacgtgaagtaattcacgtttgatcctttaaagttttgtaaatcagaaagagaatttcaaaatatctg |
48484145 |
T |
|
| Q |
418 |
taataactttacaacttggggatggaaatcatg-acgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgca |
516 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484146 |
taataactttacaacttggggatggaaatcatgaacgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgca |
48484245 |
T |
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| Q |
517 |
aatcgcacatctctctgatgtccat |
541 |
Q |
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||||||||||||||||| ||||||| |
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| T |
48484246 |
aatcgcacatctctctgttgtccat |
48484270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 191 - 321
Target Start/End: Complemental strand, 10036660 - 10036530
Alignment:
| Q |
191 |
ccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagc |
290 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || ||||| ||||||||||| || |||| |||||||||||||| |
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| T |
10036660 |
ccttttactggacaaaggcagcactctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagc |
10036561 |
T |
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| Q |
291 |
actcttggtgaacagcaacttggcatctgca |
321 |
Q |
| |
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| || ||||| || || | |||||||||||| |
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| T |
10036560 |
attcctggtggactgctatttggcatctgca |
10036530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 10264 - 10156
Alignment:
| Q |
192 |
cttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagca |
291 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||| ||||||| |||||||||| ||||||| || |||||||||||| |
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| T |
10264 |
cttttactggacaaaggcaacactctctttcaacatcaggagtttcgcatactctagaaacccaataagtaaaatcctgaacatgctctgcaccatagca |
10165 |
T |
|
| Q |
292 |
ctcttggtg |
300 |
Q |
| |
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|||||||| |
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| T |
10164 |
ttcttggtg |
10156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 1289 - 1176
Alignment:
| Q |
184 |
tgacatgccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgca |
283 |
Q |
| |
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|||| |||||||||||| ||| ||||| ||||||||||||||||| |||||||| || |||||| || ||| ||||||||||| ||||||| || |||| |
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| T |
1289 |
tgacgtgccttttactgtacaaaggcaacactctctttcaacatcaggagtttcgcatactcta-gaatccaagaagtaaaatcatgaacatgctctgca |
1191 |
T |
|
| Q |
284 |
ccatagcactcttgg |
298 |
Q |
| |
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|||||||| |||||| |
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| T |
1190 |
ccatagcattcttgg |
1176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 1371 - 1475
Alignment:
| Q |
193 |
ttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcac |
292 |
Q |
| |
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|||||||||||| ||| | || ||||||||||||| | |||||| | |||||| |||| || ||||||||||||||||||| |||||||||||||| |
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| T |
1371 |
ttttactggacaaaggaaacaatctctttcaacattagaagtttcgaatactctaaaaactcaagaagtaaaatcttgaacatattttgcaccatagcat |
1470 |
T |
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| Q |
293 |
tcttg |
297 |
Q |
| |
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||||| |
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| T |
1471 |
tcttg |
1475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 10391 - 10433
Alignment:
| Q |
258 |
aagtaaaatcttgaacattctttgcaccatagcactcttggtg |
300 |
Q |
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|||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
10391 |
aagtaaaatcttgaacatgctttgcaccatagtattcttggtg |
10433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 20706190 - 20706082
Alignment:
| Q |
192 |
cttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagca |
291 |
Q |
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|
||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||| ||||||| |||||||||| ||||||| || |||||||||||| |
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| T |
20706190 |
cttttactggacaaaggcaacactctctttcaacatcaggagtttcgcatactctagaaacccaataagtaaaatcctgaacatgctctgcaccatagca |
20706091 |
T |
|
| Q |
292 |
ctcttggtg |
300 |
Q |
| |
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|||||||| |
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| T |
20706090 |
ttcttggtg |
20706082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 42559287 - 42559372
Alignment:
| Q |
215 |
tctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtg |
300 |
Q |
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|||||||||||||| ||||||||| | ||||||||||| | ||||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
42559287 |
tctctttcaacatcaggagtttcaaatgctctacaaacctaagaagtaaaatcctgaacatgctttgcaccatagcattcttggtg |
42559372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 20857074 - 20856991
Alignment:
| Q |
217 |
tctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtg |
300 |
Q |
| |
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||||||||||| ||||||| || |||||| ||||||| ||||||||||| |||||| || |||||||||||| |||||||| |
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| T |
20857074 |
tctttcaacattaagagtttcgcatactctagaaacccaagaagtaaaatccagaacatgctctgcaccatagcattcttggtg |
20856991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 20706317 - 20706359
Alignment:
| Q |
258 |
aagtaaaatcttgaacattctttgcaccatagcactcttggtg |
300 |
Q |
| |
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|||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
20706317 |
aagtaaaatcttgaacatgctttgcaccatagtattcttggtg |
20706359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 20857197 - 20857255
Alignment:
| Q |
242 |
actctacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtg |
300 |
Q |
| |
|
|||||| |||| || ||||||||||||||| ||| |||||||||||| || |||||||| |
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| T |
20857197 |
actctaaaaactcaagaagtaaaatcttgaccatgctttgcaccataacattcttggtg |
20857255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 41529049 - 41529109
Alignment:
| Q |
246 |
tacaaacccaggaagtaaaatcttgaacattctttgcaccatagcactcttggtgaacagc |
306 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||| ||||| |||||||| |||||||||||||| |
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| T |
41529049 |
tacagacccaggatgtaaagtctcgaacattttttgctccatagcattcttggtgaacagc |
41529109 |
T |
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