View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_5 (Length: 524)
Name: NF11159_low_5
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 33388503 - 33387979
Alignment:
| Q |
11 |
cagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388503 |
cagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctg |
33388404 |
T |
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| Q |
111 |
gaattttgagatctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctga |
210 |
Q |
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| T |
33388403 |
aaattttgagatctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctga |
33388304 |
T |
|
| Q |
211 |
aaccttaat-----------aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattg |
299 |
Q |
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| T |
33388303 |
aaccttaatgcgtgctttggaagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattg |
33388204 |
T |
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| Q |
300 |
gaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcgatggtatcggtacccaattgcttta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
33388203 |
gaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatttctgcgatggtagcggtacccaattgcttta |
33388104 |
T |
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| Q |
400 |
ttcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcacactattgaacgtataccatgccta |
499 |
Q |
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| T |
33388103 |
ttcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcacactattgaacgtataccatgccta |
33388004 |
T |
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| Q |
500 |
caagcaaaacaatgaggatccatct |
524 |
Q |
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| T |
33388003 |
caagcaaaacaatgaggatccatct |
33387979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 518
Target Start/End: Original strand, 20816601 - 20817119
Alignment:
| Q |
11 |
cagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctg |
110 |
Q |
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|||||||| || ||||| |||||||| ||||| |||||||||| |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
20816601 |
cagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctg |
20816700 |
T |
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| Q |
111 |
gaattttgagatctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctga |
210 |
Q |
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| T |
20816701 |
aaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccaga |
20816800 |
T |
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| Q |
211 |
aaccttaat-----------aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattg |
299 |
Q |
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||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |
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| T |
20816801 |
aaccttaatgcgcgctttggaagtgttgaattacttgggtgcaatggatgatgaaggtaacttaacaaagttgggtaagattatgagtgagtttccgttg |
20816900 |
T |
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| Q |
300 |
gaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcgatggtatcggtacccaattgcttta |
399 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| ||||| ||||||||| | || |||||||||||||||| |
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| T |
20816901 |
gaccctcagatgtcaaagatgcttgttgttagccctgagttcaactgttcaaatgagattctgtcaatttctgcgatgctgtcagtacccaattgcttta |
20817000 |
T |
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| Q |
400 |
ttcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcacactattgaacgtataccatgccta |
499 |
Q |
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| ||||||| ||| |||||| |||||| |||||||| |||||||||||| |||| |||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
20817001 |
tccggcctaaggaggcacaaatagctgcggatgaagcgaaagctaggtttatacacgttgatggagatcatctcacactcttgaatgtatatcatgccta |
20817100 |
T |
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| Q |
500 |
caagcaaaacaatgaggat |
518 |
Q |
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|||||||||||| |||||| |
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| T |
20817101 |
caagcaaaacaacgaggat |
20817119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 23 - 377
Target Start/End: Complemental strand, 38779532 - 38779167
Alignment:
| Q |
23 |
cgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgagat |
122 |
Q |
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||||| ||||||||||| ||||||||||||| |||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38779532 |
cgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
38779433 |
T |
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| Q |
123 |
ctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaat--- |
219 |
Q |
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| T |
38779432 |
ctaatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcg |
38779333 |
T |
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| Q |
220 |
--------aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattggaccctcagatg |
311 |
Q |
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|||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38779332 |
tgctttggaagtgttgaattacttgggtgcactggatgatgaaggtaacttaacaaagcttggtgagattatgagtgagtttccattggaccctcagatg |
38779233 |
T |
|
| Q |
312 |
tcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcgatg |
377 |
Q |
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| T |
38779232 |
tcaaagatgcttgttgttagtcctgagttcaactgttcgaatgagattctttcaatttctgcgatg |
38779167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 384 - 510
Target Start/End: Complemental strand, 38778748 - 38778622
Alignment:
| Q |
384 |
gtacccaattgctttattcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcacactattga |
483 |
Q |
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||||||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38778748 |
gtacccaattgctttatccggcctagggaggcacaaaaagctgcggatgaagccaaagctaggtttggacacattgatggagatcatctcacactcttga |
38778649 |
T |
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| Q |
484 |
acgtataccatgcctacaagcaaaaca |
510 |
Q |
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| T |
38778648 |
atgtataccatgcctacaagcaaaaca |
38778622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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