View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_6 (Length: 413)
Name: NF11159_low_6
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 32194846 - 32194456
Alignment:
| Q |
1 |
gagggtttttcggagaactgctcacaggttttggctcaggtagcagctgtttggcatgccttgaagcatgcacggccagatagtaaaaactagaaccata |
100 |
Q |
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| T |
32194846 |
gagggtttttcggagaactgctcacaggttttggctctggtagcagctgtttggcatgccttgaagcatgcacggccagatagtaaaaactagaaccata |
32194747 |
T |
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| Q |
101 |
tgaactggttgcctctgtctcacggttatgtccaatgcaactcagatgttgctatagtttctgcccaaaatggagttggtatgggagcatgtgtgcatga |
200 |
Q |
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| T |
32194746 |
tgaactggttgcctctgtctcacggttatgtccaatgcaactcagatgttgctatagtttctgcccaaaacggagttggtatgggagcatgtgtgcatga |
32194647 |
T |
|
| Q |
201 |
tagtgcatgccgtttaacaccagcatactctatgtggattccttcaactatgacggcggtggaaggggaagcgtgggggctgttgcaatctctcaagtgg |
300 |
Q |
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| T |
32194646 |
tagtgcaggccgtttaacaccagcaaactctatgtggattccttcaactatgacggcggtggaaggggaagcatgggggctgttgcaatctctcaagtgg |
32194547 |
T |
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| Q |
301 |
cttgtgtccatgaatcttgaatttattgaattggaaagtaagcaagttgtgactgatatctacaatgttaaaactgatttatctgagtatg |
391 |
Q |
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| T |
32194546 |
cttgtgtccttgaatcttgaatttattgaattggaaagtaagcaagttgtgactgatatctacaatgttaaaactgatttatctgagtatg |
32194456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 32185928 - 32185809
Alignment:
| Q |
274 |
tgggggctgttgcaatctctcaagtggcttgtgtccatgaatcttgaatttattgaattggaaagtaagcaagttgtgactgatatctacaa----tgtt |
369 |
Q |
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| T |
32185928 |
tgggggctgttgcaatctctcaagtggcttatgtccatgaatcatgactttattgaattggacagtaa--atgtggtgactaatacctacaattattgct |
32185831 |
T |
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| Q |
370 |
aaaactgatttatctgagtatg |
391 |
Q |
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| T |
32185830 |
aaaactgatttatctgagtatg |
32185809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 32186870 - 32186803
Alignment:
| Q |
268 |
gaagcgtgggggctgttgcaatctctcaagtggcttgtgtccatgaatcttgaatttattgaattgga |
335 |
Q |
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| T |
32186870 |
gaagcgtgggggctgttgcaatctctcaagtggcttatgtcaatgaatcttgactttattgaattgga |
32186803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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