View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_8 (Length: 401)
Name: NF11159_low_8
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 11472295 - 11472658
Alignment:
| Q |
18 |
atagcaaagtcacatgcttttgccttagcttagactagaagacaaatttgttacctttgttggagaaagaaagataagatttattt-acattaatgcnnn |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11472295 |
atagcaaagtcacatgcttttgccttagcttaaactagaagacaaatatgatacctttgttggagaaagaaagataagatttattttacattaatgcaaa |
11472394 |
T |
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| Q |
117 |
nnnncagtttgagactcaacagcaaagttagtacaagtagtcaccaagaagaaaattaaattttagtttcttatgttgtccttttcacatctaccttcct |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472395 |
aatacagtttcagactcaacagcaaagttagtacaagtagtcaccaagaagaaaattaaattttagtttcttatgttgtccttttcacatctaccttcct |
11472494 |
T |
|
| Q |
217 |
ttaactgcattagtttacatatatcataaaacaaacttcataatttactttcataccgaactatttcaaaacaagatatccaatttcatgactaacactt |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472495 |
ttaactgcattagtttacatat--cataaaacaaacttcataatttactttcatacagaactatttcaaaacaagatatccaatttcatgactaacactt |
11472592 |
T |
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| Q |
317 |
acaaatttcatacgagatatccaacactaatagatctaaacaggcatcacaactaaacacataccc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11472593 |
acaaatttcatacgagatatccaacactaatagatctaaactggcatcacaactaaacacataccc |
11472658 |
T |
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