View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11159_low_9 (Length: 354)
Name: NF11159_low_9
Description: NF11159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11159_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 24181224 - 24181043
Alignment:
| Q |
1 |
tgtggttcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtcattgggattgagagatgatggtggcatgaattcac |
100 |
Q |
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| T |
24181224 |
tgtggctcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtcattgggattgagagatgatggtggcatgaattcac |
24181125 |
T |
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| Q |
101 |
cacatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgtaagaaacaaccatggaggatga |
182 |
Q |
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| T |
24181124 |
cacatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgtaagaaacaaccatggatgatga |
24181043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 239 - 344
Target Start/End: Complemental strand, 24180980 - 24180875
Alignment:
| Q |
239 |
ctgtaacttggcgtttatgtgtgccgtttgtgaaaggtgaagactttaaggttatgtttggttgtatttgagaatctgcatctatgtttcttgaggtgat |
338 |
Q |
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| T |
24180980 |
ctgtaacttggcgtttatgtgtgccgtttgtgaaaggtgaagactttaaggttatgtttggttgtatttgagaatctgcatctatgtttcttgaggtgat |
24180881 |
T |
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| Q |
339 |
gtccat |
344 |
Q |
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|||||| |
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| T |
24180880 |
gtccat |
24180875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 2494665 - 2494823
Alignment:
| Q |
3 |
tggttcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtca-ttgggattgagagatgatggtggcatgaattcacc |
101 |
Q |
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|||||||||||||||||| || ||||| |||||||||||||||||||| | |||| | ||||| |||| ||| | || || || |||||||||||| |
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| T |
2494665 |
tggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgct-gttggtgatgtcatgaattcacc |
2494763 |
T |
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| Q |
102 |
acatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgta |
161 |
Q |
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||| ||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
2494764 |
acagccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
2494823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 3683929 - 3684095
Alignment:
| Q |
4 |
ggttcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtcattgggattgagagatgatggtggcatgaattcaccac |
103 |
Q |
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||||||||||||||||||||||||||||| ||||| || |||||||| | ||| |||||||| || || | || || |||||||||||||| || |
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| T |
3683929 |
ggttcacggcggtggaaattccggtgacaaccacatgcggcacattttatggaggcagggtcatcggaggtggcggttggtgatggcatgaattcacaac |
3684028 |
T |
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| Q |
104 |
atccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgtaagaaacaac |
170 |
Q |
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| || || || ||||| |||||||||| ||| | || |||||||||||||||||||||| |||||| |
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| T |
3684029 |
aaccgtctagggcatgaccacctagggttgccacgtggtttttgagacattctttgtaagtaacaac |
3684095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 46301092 - 46301127
Alignment:
| Q |
12 |
gcggtggaaattccggtgacagccacaagcagcaca |
47 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
46301092 |
gcggtggaagttccggtgacagccacaagcagcaca |
46301127 |
T |
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