View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1115_high_14 (Length: 272)
Name: NF1115_high_14
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 44804003 - 44804202
Alignment:
| Q |
1 |
aaaccagtaaaagattaatatcctattcctctaattatctatttaatatcgctaacaaaaaatacatcatgtaaaaagttgaaaggagtagtattattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44804003 |
aaaccagtaaaagattaatatcctattcctctaattatctatttaatatcgctaacaaaaaatacatcatgtaaaaagttgaaaggagtagtattattca |
44804102 |
T |
|
| Q |
101 |
tttactttcggatatttaatcagttatagttattttatgtgggcagctagcatactgtggatactttgtatatgaattttcaataaatgaccaatggact |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44804103 |
tttactttccgatatttaatcagttatagttattttatgtgggcagctagcatactgtggatactttgtatatgaattttcaataaatgaccaatggact |
44804202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 44797096 - 44797169
Alignment:
| Q |
61 |
aatacatcatgtaaaaagttgaaaggagtagtattattcatttactttcggatatttaatcagttatagttatt |
134 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
44797096 |
aatacatcatgtaaaaaattgaaaggagtggtattattcatttactttcagatatttaatcagtcataattatt |
44797169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 44800223 - 44800264
Alignment:
| Q |
68 |
catgtaaaaagttgaaaggagtagtattattcatttactttc |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
44800223 |
catgtaaaaaattgaaaggagtagtattactcattcactttc |
44800264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University