View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_high_19 (Length: 215)
Name: NF1115_high_19
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 25377128 - 25376973
Alignment:
| Q |
52 |
attatgtggggttgagtataatttggacctatgaaaaaattggtccaacatgtacttgnnnnnnnaaccctcaaattaaatggttccaccaaatcttatc |
151 |
Q |
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| T |
25377128 |
attacgtggggttgagtataatttggacctatggaaaaattggtccaacatatacttgtttttttaaccctcaaattagatggttccaccaaatcttatc |
25377029 |
T |
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| Q |
152 |
atagtccatcaacaccaaatcaaacctacaacactttctcatgttcttctcactcg |
207 |
Q |
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| T |
25377028 |
atagtccatcaacaccaaattaaatctacaacactttctcatgttcttctctctcg |
25376973 |
T |
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Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 41422285 - 41422426
Alignment:
| Q |
61 |
ggttgagtataatttggacctatgaaaaaattggtccaacatgtacttgnnnnnnnaaccctcaaattaaatggttccaccaaatcttatcatagtccat |
160 |
Q |
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| T |
41422285 |
ggttcagtataatttggatctatggaaaaattggtccaacatgaacctgtttttttaaccctcaaattagatggttccaccaaatcttattatagtccat |
41422384 |
T |
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| Q |
161 |
caacaccaaatcaaacctacaacactttctcatgttcttctc |
202 |
Q |
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| T |
41422385 |
caacaccaaatcaaacctacaatactttctcatgttcttctc |
41422426 |
T |
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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 24994686 - 24994745
Alignment:
| Q |
118 |
accctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacc |
177 |
Q |
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| T |
24994686 |
accctcaaattagaagattgcaccaaatcttatcatagtccatcaacaccaaatcaaacc |
24994745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 21458359 - 21458413
Alignment:
| Q |
126 |
attaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacctaca |
181 |
Q |
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| T |
21458359 |
attagatggttccac-aaatcttatcatagtccaccaacactaaatcaaacctaca |
21458413 |
T |
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