View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_high_3 (Length: 525)
Name: NF1115_high_3
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 277 - 512
Target Start/End: Complemental strand, 4410050 - 4409814
Alignment:
| Q |
277 |
gatttttgactacttacttatttgataacaagaacaattttaagataaggctacagttnnnnnnnn-tgtttgtaagcaaaaacaaatgaaccaaccttg |
375 |
Q |
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| T |
4410050 |
gatttttgactacttacttatttgataacaagaacaattttaagataaggctacagttaaaaaaaaatgtttgtaagcaaaaacaaatgaaccaaccttg |
4409951 |
T |
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| Q |
376 |
tcttaataagcataggaaccttaaataaatcaaacagagccaccatatgaaactttacatatatctgtcaaaatcttcaaaaattcaaacatttttgaca |
475 |
Q |
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| T |
4409950 |
tcttaataagcataggaaccttacataaatcaaacagagccaccatatgaaactttacatatatctgtcaaaatcttcaaaaattcaaacatttttgaca |
4409851 |
T |
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| Q |
476 |
acttctttgcaggatttgtagttgccttgtcctatga |
512 |
Q |
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| T |
4409850 |
acttctttgcaggatttgtagttgccttgtcctatga |
4409814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 4410297 - 4410106
Alignment:
| Q |
30 |
atggtaacttgattcatgaaactaccatcaacatgttgatcttgttcgccaccagaaagtattggaattccatttatgatgttgttttggttgttaaggt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410297 |
atggtaacttgattcatgaaactaccatcaacatgttgatcttgttctccaccagaaagtattggaattccatttatgatgttgttttggttgttaaggt |
4410198 |
T |
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| Q |
130 |
caaatgaatagcaatgaatgagtggcttttgtgttagatgttgtgtgatatcttccatgttcatttgagcagtgtacacatcattctccatt |
221 |
Q |
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| T |
4410197 |
caaatgaatagtaatgaatgagtggcttttgtgttagatgttgtgtgatatcttccatgttcatttgagcagtgtacacatcattctccatt |
4410106 |
T |
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