View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_high_6 (Length: 313)
Name: NF1115_high_6
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 24225404 - 24225601
Alignment:
| Q |
38 |
aaatatttagcatcgaatctattgttaaattcattttcacttaaatatattgaagnnnnnnnnnnn---gaaagaaaatatattgaatctattgttaaat |
134 |
Q |
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| T |
24225404 |
aaatatttagcatcgaatctattgttaaattcattttcacttaaatatattgaagttttttttttttttgaaagaaaatatattgaatctattgttaaat |
24225503 |
T |
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| Q |
135 |
tcatttttacttaaatatatttcatcataaataactttaaattcaactcaattttacaaaaccaatttacttaaaatcaattattagcattgtttaac |
232 |
Q |
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| T |
24225504 |
tcattttaacttaaatatatttaatcataaataactttaaattcaactcaattttacaaaatcaatttacataaaatcaattattatcattgtataac |
24225601 |
T |
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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 3542960 - 3543020
Alignment:
| Q |
240 |
ggatatttctcagaatctgcatgaattatctcgtgtgaatactagtattacttggcaacag |
300 |
Q |
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| T |
3542960 |
ggatatttctcagaatctgcatgaattatctcgtgtgaacactagtattacttggcaacag |
3543020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 31677210 - 31677151
Alignment:
| Q |
241 |
gatatttctcagaatctgcatgaattatctcgtgtgaatactagtattacttggcaacag |
300 |
Q |
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| T |
31677210 |
gatatttctcagaatatgcatgaattatctcgtgtgaatactagtattacttggcaacag |
31677151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 43438685 - 43438619
Alignment:
| Q |
124 |
tattgttaaattcatttttacttaaatatatttcatcataaataactttaaattcaactcaatttta |
190 |
Q |
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| T |
43438685 |
tattgttaaattcatttttacataaatacattcaaacatagataactttacatttaactcactttta |
43438619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 24869069 - 24869106
Alignment:
| Q |
179 |
aactcaattttacaaaaccaatttacttaaaatcaatt |
216 |
Q |
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| T |
24869069 |
aactcaattttacataatcaatttacttaaaatcaatt |
24869106 |
T |
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