View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1115_high_9 (Length: 292)

Name: NF1115_high_9
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1115_high_9
NF1115_high_9
[»] chr3 (1 HSPs)
chr3 (14-104)||(25376973-25377063)
[»] chr7 (1 HSPs)
chr7 (14-99)||(41422341-41422426)
[»] chr8 (1 HSPs)
chr8 (15-74)||(24994686-24994745)
[»] chr6 (1 HSPs)
chr6 (23-78)||(21458359-21458413)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 25377063 - 25376973
Alignment:
Q  14 aaccctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacctacaacactttctcatgttcttctcactcg 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  25377063 aaccctcaaattagatggttccaccaaatcttatcatagtccatcaacaccaaattaaatctacaacactttctcatgttcttctctctcg 25376973  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 41422341 - 41422426
Alignment:
Q  14 aaccctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacctacaacactttctcatgttcttctc 99  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41422341 aaccctcaaattagatggttccaccaaatcttattatagtccatcaacaccaaatcaaacctacaatactttctcatgttcttctc 41422426  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 24994686 - 24994745
Alignment:
Q  15 accctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacc 74  Q
    |||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||    
T  24994686 accctcaaattagaagattgcaccaaatcttatcatagtccatcaacaccaaatcaaacc 24994745  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 21458359 - 21458413
Alignment:
Q  23 attaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacctaca 78  Q
    |||| |||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  21458359 attagatggttccac-aaatcttatcatagtccaccaacactaaatcaaacctaca 21458413  T

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