View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_11 (Length: 331)
Name: NF1115_low_11
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_11 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 40812614 - 40812442
Alignment:
| Q |
72 |
agctgttgctcaccacacttctttcaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatg |
171 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40812614 |
agctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatg |
40812515 |
T |
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| Q |
172 |
gccaaggttcatccacatcaagaatccacatcctctgattgtctcatcagcaggtctaataaaagagaaacat |
244 |
Q |
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| T |
40812514 |
gccaaagttcatccacatcaagaatccacatcctctgattctctcatcagcaggtctaataaaagagaaacat |
40812442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 40805867 - 40805779
Alignment:
| Q |
112 |
caccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaggttcatccacatcaagaatcca |
199 |
Q |
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| T |
40805867 |
caccaattaattagaagcttgatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaagtttatccacatcaagaatcca |
40805779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 40817772 - 40817659
Alignment:
| Q |
89 |
cttctttcaaaaatcaaaacatacaccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaggttcatccac |
187 |
Q |
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| T |
40817772 |
cttctttcaaaaatcaaaacatacaacaattaattataagctcaatcctcttgaatatcacaatcacaatagtaaaaaagaatggccagaatttatcctc |
40817673 |
T |
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| Q |
188 |
atcaagaatccaca |
201 |
Q |
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| T |
40817672 |
aacaagaatccaca |
40817659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 40807380 - 40807350
Alignment:
| Q |
209 |
attgtctcatcagcaggtctaataaaagaga |
239 |
Q |
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| T |
40807380 |
attgtctcatcagcaggtctaataaaagaga |
40807350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 14589 - 14763
Alignment:
| Q |
72 |
agctgttgctcaccacacttctttcaaaa-atcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataatagtaac-aaaaaa |
169 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14589 |
agctgttgatcaccacacttctttcaaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaaa |
14688 |
T |
|
| Q |
170 |
tggccaaggttcatccacatcaagaatccacatcctctgattgtctcatcagcaggtctaataaaagagaaacat |
244 |
Q |
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| T |
14689 |
tggccaaagttcatccacatcaagaatccacatcctctgattctctcatcagcaggtctaataaaagagaaacat |
14763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 8776 - 8865
Alignment:
| Q |
112 |
caccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggcc-aaggttcatccacatcaagaatcca |
199 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
8776 |
caccaattaattagaagcttgatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaagttttatccacatcaagaatcca |
8865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 7246 - 7276
Alignment:
| Q |
209 |
attgtctcatcagcaggtctaataaaagaga |
239 |
Q |
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| T |
7246 |
attgtctcatcagcaggtctaataaaagaga |
7276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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