View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_12 (Length: 327)
Name: NF1115_low_12
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 13295374 - 13295316
Alignment:
| Q |
173 |
gccaaacacgtgtgtagccgacctaatttagtagaaaaaagtttggttgtttgttgtat |
231 |
Q |
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| T |
13295374 |
gccaaacacgtgcgtagccgacctaatttagtagaaaaaagtttggttgtttgttgtat |
13295316 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36366831 - 36366878
Alignment:
| Q |
1 |
cgaaatatggtgtgtaataaaacattatggtgtaatttgatctatgta |
48 |
Q |
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| T |
36366831 |
cgaaatatggtttataatagaacattatggtgtaatttgatccatgta |
36366878 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 34444553 - 34444598
Alignment:
| Q |
3 |
aaatatggtgtgtaataaaacattatggtgtaatttgatctatgta |
48 |
Q |
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| T |
34444553 |
aaatatggtttataataaaacattatggtgtaatttgatctatgta |
34444598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 7762522 - 7762476
Alignment:
| Q |
3 |
aaatatggtgtgtaataaaacattatggtgtaatttgatctatgtaa |
49 |
Q |
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| T |
7762522 |
aaatatggtttataatagaacattatggtgtaatttgatttatgtaa |
7762476 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 38346067 - 38345992
Alignment:
| Q |
91 |
aaagcatattgggctgtgatttgttgaagctatatattagagcttcttaccaaacatgtggcagcgtctaacatac |
166 |
Q |
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| T |
38346067 |
aaagcacatttggccgtgatttgctaaagctatatattagagcttctcacctaatgtgtggcggcgtctaagatac |
38345992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 25891086 - 25891130
Alignment:
| Q |
4 |
aatatggtgtgtaataaaacattatggtgtaatttgatctatgta |
48 |
Q |
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| T |
25891086 |
aatatggtttataatagaacattatggtgtaatttgatccatgta |
25891130 |
T |
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