View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1115_low_16 (Length: 296)

Name: NF1115_low_16
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1115_low_16
NF1115_low_16
[»] chr6 (32 HSPs)
chr6 (220-296)||(2843656-2843732)
chr6 (238-292)||(2378231-2378285)
chr6 (235-296)||(3409761-3409822)
chr6 (225-296)||(29518604-29518675)
chr6 (225-296)||(29519021-29519092)
chr6 (225-296)||(32741280-32741351)
chr6 (223-296)||(2578427-2578500)
chr6 (220-296)||(16455008-16455084)
chr6 (238-296)||(1846849-1846907)
chr6 (238-296)||(2377855-2377913)
chr6 (238-296)||(16454676-16454734)
chr6 (239-296)||(2579109-2579166)
chr6 (249-296)||(3409360-3409407)
chr6 (239-294)||(5832027-5832082)
chr6 (238-296)||(2578834-2578892)
chr6 (238-296)||(10074362-10074420)
chr6 (247-292)||(2579880-2579925)
chr6 (238-283)||(14748341-14748386)
chr6 (231-296)||(16107779-16107844)
chr6 (247-290)||(2579500-2579543)
chr6 (246-293)||(3409405-3409452)
chr6 (238-296)||(3058327-3058385)
chr6 (238-296)||(3415559-3415619)
chr6 (239-296)||(12071691-12071748)
chr6 (240-293)||(16108155-16108208)
chr6 (239-296)||(35210305-35210362)
chr6 (241-296)||(10073618-10073673)
chr6 (239-294)||(10073991-10074046)
chr6 (241-271)||(2975297-2975327)
chr6 (246-296)||(6999803-6999853)
chr6 (238-296)||(26544150-26544208)
chr6 (251-296)||(12085046-12085091)
[»] chr5 (28 HSPs)
chr5 (220-296)||(3295326-3295402)
chr5 (220-295)||(3294996-3295071)
chr5 (223-294)||(27502020-27502091)
chr5 (240-296)||(36492218-36492274)
chr5 (238-296)||(6500551-6500609)
chr5 (238-296)||(40296314-40296372)
chr5 (238-296)||(15370200-15370258)
chr5 (226-296)||(1028504-1028574)
chr5 (238-296)||(6500923-6500981)
chr5 (238-296)||(25328036-25328094)
chr5 (238-296)||(26900016-26900074)
chr5 (246-296)||(34753032-34753082)
chr5 (238-296)||(41632883-41632941)
chr5 (241-296)||(15370503-15370558)
chr5 (229-296)||(35167828-35167895)
chr5 (237-296)||(41170735-41170794)
chr5 (238-296)||(42405597-42405653)
chr5 (238-296)||(299590-299648)
chr5 (246-296)||(624297-624347)
chr5 (246-296)||(18603127-18603177)
chr5 (229-296)||(623919-623986)
chr5 (237-296)||(12662650-12662709)
chr5 (253-296)||(13415774-13415817)
chr5 (238-296)||(32487494-32487552)
chr5 (246-296)||(33747872-33747922)
chr5 (250-296)||(38427320-38427366)
chr5 (231-296)||(301052-301117)
chr5 (235-296)||(26075157-26075218)
[»] chr4 (46 HSPs)
chr4 (233-296)||(41370458-41370521)
chr4 (238-296)||(54343005-54343063)
chr4 (240-296)||(36629338-36629394)
chr4 (237-296)||(25483437-25483496)
chr4 (241-296)||(39792860-39792915)
chr4 (238-296)||(23817678-23817736)
chr4 (238-296)||(39404119-39404177)
chr4 (238-296)||(18932746-18932804)
chr4 (238-296)||(22028366-22028424)
chr4 (239-296)||(49076829-49076886)
chr4 (231-296)||(54017585-54017650)
chr4 (240-296)||(1731646-1731702)
chr4 (240-292)||(39404503-39404555)
chr4 (220-296)||(44620760-44620836)
chr4 (240-296)||(50459822-50459878)
chr4 (246-296)||(3340908-3340958)
chr4 (246-296)||(10246020-10246070)
chr4 (242-296)||(32941124-32941178)
chr4 (238-296)||(36608658-36608716)
chr4 (238-296)||(43827540-43827598)
chr4 (220-296)||(44621103-44621176)
chr4 (238-296)||(50002527-50002585)
chr4 (226-296)||(50630740-50630810)
chr4 (223-283)||(11702281-11702341)
chr4 (248-296)||(54108638-54108686)
chr4 (249-296)||(52884797-52884844)
chr4 (249-296)||(54109013-54109060)
chr4 (238-296)||(20825937-20825995)
chr4 (246-292)||(41370763-41370809)
chr4 (238-296)||(43174242-43174300)
chr4 (220-296)||(44620454-44620527)
chr4 (238-296)||(54936297-54936354)
chr4 (238-296)||(55933121-55933179)
chr4 (238-271)||(3271915-3271948)
chr4 (251-296)||(19504797-19504842)
chr4 (229-294)||(45489702-45489767)
chr4 (240-296)||(16889535-16889591)
chr4 (240-292)||(22027960-22028012)
chr4 (248-287)||(19895406-19895445)
chr4 (238-296)||(22183261-22183319)
chr4 (246-284)||(23817460-23817498)
chr4 (223-296)||(34004567-34004640)
chr4 (239-296)||(36572120-36572177)
chr4 (247-296)||(45489338-45489387)
chr4 (240-296)||(34646648-34646704)
chr4 (241-285)||(39698944-39698988)
[»] chr2 (35 HSPs)
chr2 (237-296)||(6422211-6422270)
chr2 (238-296)||(6421486-6421544)
chr2 (238-296)||(14745666-14745724)
chr2 (246-296)||(15511502-15511552)
chr2 (246-296)||(36178612-36178662)
chr2 (238-296)||(37106025-37106083)
chr2 (231-296)||(962699-962764)
chr2 (223-296)||(6421832-6421905)
chr2 (220-296)||(5542606-5542682)
chr2 (242-294)||(36005883-36005935)
chr2 (249-296)||(1769993-1770040)
chr2 (237-296)||(3673169-3673228)
chr2 (238-296)||(36178170-36178228)
chr2 (238-296)||(41283474-41283532)
chr2 (238-296)||(42514750-42514808)
chr2 (223-296)||(23346337-23346410)
chr2 (231-296)||(35580716-35580781)
chr2 (155-195)||(23960362-23960402)
chr2 (47-87)||(23960362-23960402)
chr2 (250-294)||(40163383-40163427)
chr2 (237-296)||(3672802-3672861)
chr2 (233-296)||(6713078-6713141)
chr2 (241-296)||(37106289-37106344)
chr2 (237-296)||(40733983-40734042)
chr2 (246-296)||(5543005-5543055)
chr2 (246-296)||(15880364-15880414)
chr2 (239-296)||(29676630-29676687)
chr2 (237-296)||(40733618-40733677)
chr2 (246-296)||(6421727-6421777)
chr2 (246-296)||(7598702-7598752)
chr2 (250-296)||(33731749-33731795)
chr2 (246-296)||(40679636-40679686)
chr2 (242-287)||(16590993-16591038)
chr2 (231-271)||(14745285-14745325)
chr2 (240-292)||(38796619-38796671)
[»] scaffold0702 (2 HSPs)
scaffold0702 (238-292)||(146-200)
scaffold0702 (238-296)||(513-571)
[»] chr3 (40 HSPs)
chr3 (238-296)||(22303954-22304012)
chr3 (236-296)||(22304670-22304730)
chr3 (238-296)||(37990638-37990696)
chr3 (230-296)||(54018189-54018255)
chr3 (223-296)||(3135438-3135511)
chr3 (240-296)||(37990978-37991034)
chr3 (241-296)||(15772955-15773010)
chr3 (223-294)||(25755497-25755568)
chr3 (237-291)||(21832343-21832397)
chr3 (247-296)||(39934963-39935012)
chr3 (231-296)||(42342082-42342147)
chr3 (236-288)||(22304302-22304354)
chr3 (220-296)||(32589804-32589880)
chr3 (228-296)||(53577465-53577533)
chr3 (226-293)||(8328374-8328441)
chr3 (220-296)||(15773293-15773371)
chr3 (249-296)||(32462910-32462957)
chr3 (241-296)||(43346793-43346848)
chr3 (237-296)||(54017814-54017873)
chr3 (238-296)||(50612446-50612504)
chr3 (231-296)||(33803244-33803309)
chr3 (238-294)||(35946625-35946681)
chr3 (237-296)||(42342386-42342445)
chr3 (238-296)||(12114561-12114619)
chr3 (238-296)||(29644901-29644959)
chr3 (246-296)||(31190110-31190160)
chr3 (238-296)||(41359490-41359548)
chr3 (238-292)||(41359764-41359818)
chr3 (223-296)||(39914353-39914425)
chr3 (226-270)||(1634302-1634346)
chr3 (220-270)||(9239940-9239990)
chr3 (238-296)||(25739424-25739482)
chr3 (238-296)||(43978864-43978922)
chr3 (231-296)||(29644573-29644638)
chr3 (231-268)||(37726625-37726662)
chr3 (247-296)||(45395661-45395710)
chr3 (231-296)||(54017540-54017605)
chr3 (240-296)||(11662053-11662108)
chr3 (236-296)||(22303656-22303716)
chr3 (220-296)||(32462540-32462615)
[»] chr8 (39 HSPs)
chr8 (242-296)||(30441186-30441240)
chr8 (238-296)||(40579268-40579326)
chr8 (231-296)||(3669788-3669853)
chr8 (239-296)||(5915968-5916025)
chr8 (247-296)||(34834977-34835026)
chr8 (246-296)||(3670161-3670211)
chr8 (238-296)||(6876861-6876919)
chr8 (238-296)||(8919143-8919201)
chr8 (226-296)||(9482591-9482661)
chr8 (238-296)||(40518172-40518230)
chr8 (231-296)||(6651595-6651660)
chr8 (241-296)||(3038292-3038347)
chr8 (237-296)||(34835310-34835369)
chr8 (237-296)||(34835576-34835635)
chr8 (237-296)||(34835842-34835901)
chr8 (237-295)||(45122726-45122784)
chr8 (247-296)||(1014253-1014302)
chr8 (223-296)||(20870557-20870630)
chr8 (238-295)||(41129090-41129147)
chr8 (47-83)||(41416203-41416239)
chr8 (155-191)||(41416203-41416239)
chr8 (232-296)||(45121649-45121713)
chr8 (249-296)||(45122067-45122114)
chr8 (246-296)||(9483194-9483244)
chr8 (246-296)||(37544497-37544547)
chr8 (247-296)||(6731996-6732045)
chr8 (246-295)||(9608847-9608896)
chr8 (238-295)||(43274634-43274691)
chr8 (238-286)||(3037968-3038016)
chr8 (240-296)||(33113368-33113424)
chr8 (241-296)||(40518683-40518738)
chr8 (237-296)||(45123107-45123166)
chr8 (226-296)||(12283973-12284043)
chr8 (247-285)||(25561823-25561861)
chr8 (246-296)||(40579513-40579563)
chr8 (247-296)||(1013879-1013928)
chr8 (238-271)||(9309107-9309140)
chr8 (238-271)||(9309480-9309513)
chr8 (238-294)||(1513914-1513970)
[»] chr1 (34 HSPs)
chr1 (238-296)||(41142474-41142532)
chr1 (239-296)||(32168698-32168755)
chr1 (232-296)||(26661515-26661579)
chr1 (238-296)||(41157092-41157150)
chr1 (238-296)||(44290823-44290881)
chr1 (239-296)||(3537599-3537656)
chr1 (239-296)||(41759584-41759641)
chr1 (248-296)||(37555830-37555878)
chr1 (248-296)||(37556212-37556260)
chr1 (248-296)||(41157476-41157524)
chr1 (238-296)||(24600313-24600371)
chr1 (238-296)||(34649539-34649597)
chr1 (238-296)||(45493973-45494031)
chr1 (228-296)||(11977045-11977113)
chr1 (232-296)||(14318968-14319032)
chr1 (220-296)||(37850582-37850657)
chr1 (233-296)||(11977381-11977444)
chr1 (241-296)||(40082507-40082562)
chr1 (238-296)||(31767160-31767218)
chr1 (238-296)||(44290457-44290515)
chr1 (238-296)||(45084477-45084535)
chr1 (246-296)||(48588495-48588545)
chr1 (238-296)||(50052023-50052080)
chr1 (239-296)||(5319965-5320022)
chr1 (239-296)||(21378059-21378116)
chr1 (231-296)||(39066193-39066257)
chr1 (231-296)||(50051681-50051745)
chr1 (232-296)||(29798300-29798364)
chr1 (249-296)||(9956010-9956057)
chr1 (239-296)||(4266798-4266853)
chr1 (262-296)||(26661921-26661955)
chr1 (254-296)||(38804370-38804412)
chr1 (223-292)||(3875315-3875384)
chr1 (250-294)||(24131999-24132043)
[»] chr7 (28 HSPs)
chr7 (223-296)||(1085600-1085673)
chr7 (241-296)||(37167882-37167937)
chr7 (237-296)||(45433342-45433401)
chr7 (246-296)||(28300575-28300625)
chr7 (238-296)||(37533363-37533421)
chr7 (239-296)||(47129470-47129527)
chr7 (238-296)||(23376-23434)
chr7 (238-296)||(11845292-11845350)
chr7 (238-296)||(30253671-30253729)
chr7 (238-296)||(40094773-40094831)
chr7 (250-296)||(45754816-45754862)
chr7 (240-296)||(30244453-30244509)
chr7 (238-294)||(37533010-37533066)
chr7 (241-296)||(9901744-9901799)
chr7 (249-296)||(19122832-19122879)
chr7 (241-296)||(34218036-34218091)
chr7 (241-296)||(37532753-37532808)
chr7 (238-296)||(6054661-6054719)
chr7 (238-296)||(8128440-8128498)
chr7 (238-296)||(22567038-22567096)
chr7 (238-296)||(30244371-30244429)
chr7 (238-296)||(30245256-30245314)
chr7 (248-296)||(7517681-7517729)
chr7 (238-285)||(30032679-30032726)
chr7 (247-294)||(36939741-36939788)
chr7 (238-296)||(24177536-24177594)
chr7 (231-296)||(28300245-28300310)
chr7 (239-283)||(118299-118343)
[»] scaffold0027 (1 HSPs)
scaffold0027 (237-292)||(47465-47520)
[»] scaffold0734 (1 HSPs)
scaffold0734 (248-296)||(5498-5546)
[»] scaffold0014 (2 HSPs)
scaffold0014 (47-87)||(135069-135109)
scaffold0014 (155-195)||(135069-135109)
[»] scaffold0391 (2 HSPs)
scaffold0391 (246-296)||(1113-1163)
scaffold0391 (231-271)||(1675-1715)
[»] scaffold0078 (1 HSPs)
scaffold0078 (246-296)||(5083-5133)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 2843732 - 2843656
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2843732 ggatcatgaggggagttagggggaccgtccacatcgaggctagaacaaccactcaagcaagagagataccacactct 2843656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 2378285 - 2378231
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2378285 gggggaccgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 2378231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 3409822 - 3409761
Alignment:
Q  235 ttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3409822 ttagggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 3409761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 29518675 - 29518604
Alignment:
Q  225 atgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||   ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  29518675 atgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 29518604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 29519092 - 29519021
Alignment:
Q  225 atgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||   ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  29519092 atgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 29519021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 32741351 - 32741280
Alignment:
Q  225 atgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||   ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  32741351 atgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 32741280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 2578427 - 2578500
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| || | ||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  2578427 tcatgaggggggctagggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactct 2578500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 16455084 - 16455008
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||| |||| | ||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  16455084 ggattatgaggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactct 16455008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 1846907 - 1846849
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  1846907 gggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactct 1846849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 2377913 - 2377855
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  2377913 gggggaccttccacatcgaggctagaaaaaccactcaagcaagaaagacaccacactct 2377855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 16454734 - 16454676
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  16454734 gggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactct 16454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 2579109 - 2579166
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| || ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  2579109 ggggaccgtgcacatcgaggctagaacaaccacacgagcaagagagacaccacactct 2579166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 3409407 - 3409360
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3409407 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 3409360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 5832027 - 5832082
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    |||||| ||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  5832027 ggggaccgtctacatcgaggctagaacaaccacacaagtaagagagacaccacact 5832082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 2578834 - 2578892
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||  ||||||||||| ||||||| ||||||||||||||||    
T  2578834 gggggaccgtccacatcgaggtcagaacaaccacacaagcaaaagagacaccacactct 2578892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 10074362 - 10074420
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||||||||||||||||||||||||| | ||  ||||||||||||||||||    
T  10074362 gggggactatccacatcgaggctagaacaaccacactagtgagagagacaccacactct 10074420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 2579880 - 2579925
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  2579880 tccacatcgaggctagaacaaccgcacaagcaagagagacaccaca 2579925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 14748341 - 14748386
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagaga 283  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  14748341 gggggaccgtccacatcgaggctagaacaaccacacaagcaagaga 14748386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 16107844 - 16107779
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||| ||   |||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  16107844 ggagttaggggtaccacccacatcgaggctagagcaaccgcacaagcaagagagacaccacactct 16107779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 2579500 - 2579543
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacacca 290  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  2579500 tccacatcgaggttagaacaaccacacaagcaagagagacacca 2579543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 3409452 - 3409405
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacac 293  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||    
T  3409452 gtccacatcgaggctagaacaaccgcataagcaagagagacaccacac 3409405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 3058385 - 3058327
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||| |||||| |||   ||||||||||||||||||||||||    
T  3058385 gggggacggtccacatcgaggttagaaccaccctacaagcaagagagacaccacactct 3058327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 3415619 - 3415559
Alignment:
Q  238 gggggactgtccacatcgaggctaga--acaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||||||||||||||||  |||||| | ||||||||||||||||||||||||    
T  3415619 gggggaccttccacatcgaggctagagaacaaccgcacaagcaagagagacaccacactct 3415559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 12071691 - 12071748
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| || ||||||||||||||||||||||| ||||  |||||||| |||||||||    
T  12071691 ggggaccgttcacatcgaggctagaacaaccacacaagtgagagagacgccacactct 12071748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 16108208 - 16108155
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacac 293  Q
    ||||| ||||||||||||| || ||||||| | |||||||||||||||||||||    
T  16108208 gggaccgtccacatcgaggttataacaaccccacaagcaagagagacaccacac 16108155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 35210362 - 35210305
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||||||||||||| ||||| | ||||||| ||| ||||||||||||    
T  35210362 ggggaccgtccacatcgaggctagagcaaccgcacaagcaaaagaaacaccacactct 35210305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 10073618 - 10073673
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||||||| |||||||||||||| | ||  ||||||||||||||||||    
T  10073618 ggaccgtccacatcgatgctagaacaaccacactagtgagagagacaccacactct 10073673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 10073991 - 10074046
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    |||||| |||||| ||||||||||||||||||   |||| ||||||||||||||||    
T  10073991 ggggaccgtccacgtcgaggctagaacaaccaaataagcgagagagacaccacact 10074046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 2975327 - 2975297
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccac 271  Q
    |||||||||||||||||||||||||||||||    
T  2975327 ggactgtccacatcgaggctagaacaaccac 2975297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 6999803 - 6999853
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||| |||||||||||||   |||||||||||| |||||||||    
T  6999803 gtccacatcgagactagaacaaccacattagcaagagagacgccacactct 6999853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 26544208 - 26544150
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| | ||||| ||||||||||||| | | ||||||||||||||| ||||||||    
T  26544208 gggggactcttcacattgaggctagaacaatcgcacaagcaagagagacatcacactct 26544150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 12085046 - 12085091
Alignment:
Q  251 catcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| ||||  |||||||| |||||||||    
T  12085046 catcgaggctagaacaaccacacaagtgagagagacgccacactct 12085091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 3295326 - 3295402
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  3295326 ggatcatgaggggagtgagggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaacacactct 3295402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 3294996 - 3295071
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactc 295  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  3294996 ggatcatgaggggagcgagggggactgtccacatcgaggctacaacaaccacacaaccaagagagacaccacactc 3295071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 27502020 - 27502091
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||| |||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  27502020 tcatgaggggagctagggggaccgtccacatcgaggatagaacaaccacacaagcaagagagacaccacact 27502091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 36492218 - 36492274
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36492218 gggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactct 36492274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 6500609 - 6500551
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6500609 gggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 6500551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 40296314 - 40296372
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  40296314 gggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 40296372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 15370258 - 15370200
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  15370258 gggggaccgtccacatcgaggctagaacaatcccacaagcaagagagacaccacactct 15370200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 1028504 - 1028574
Alignment:
Q  226 tgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||| ||||||||| |||||||||||||||||||||||| | ||||  |||||||| |||||||||    
T  1028504 tgaggggagctagggggaccgtccacatcgaggctagaacaaccgcacaagtgagagagacgccacactct 1028574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 6500981 - 6500923
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||||||||| |||| | |||| |||||||||||||||||||    
T  6500981 gggggaccgtccacatcgaggctagaataaccgcacaagtaagagagacaccacactct 6500923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 25328094 - 25328036
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||| ||||||||||||||||| |  |||||||||||||||||||||    
T  25328094 gggggaccgtccacattgaggctagaacaaccacacttgcaagagagacaccacactct 25328036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 26900016 - 26900074
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||| |||||||||||| | | ||||||||||||||||||||||||    
T  26900016 gggggaccgtccacatcaaggctagaacaaacccacaagcaagagagacaccacactct 26900074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 34753032 - 34753082
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  34753032 gtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactct 34753082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 41632941 - 41632883
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||| ||| ||||||| | ||||||||||||||||||||||||    
T  41632941 gggggaccgtccacatcgagactaaaacaaccgcacaagcaagagagacaccacactct 41632883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 15370558 - 15370503
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||| |||||||||    
T  15370558 ggaccgtccacatcgaggctagaacaaccccacaaacaagagagacgccacactct 15370503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 35167828 - 35167895
Alignment:
Q  229 gaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | ||   |||||||| ||||||||    
T  35167828 gaggagttagggggacagtccacatcgatgctagaacaaccacactagtgtgagagacatcacactct 35167895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 41170794 - 41170735
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||| ||| |||||||||||||||||| ||||||||| | ||||||||||||    
T  41170794 agggggaccgtctacaccgaggctagaacaaccacacaagcaagaaaaacaccacactct 41170735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 42405597 - 42405653
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||  ||||||||||||||||    
T  42405597 gggggaccgtccacatcgaggctagaacaaccgcacaagca--agagacaccacactct 42405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 299648 - 299590
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||| ||||||||||||   ||||||| |||||| |||||||||    
T  299648 gggggactgtccacatcgatgctagaacaaccgtacaagcaatagagacgccacactct 299590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 624347 - 624297
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | ||||  ||||||||||||||||||    
T  624347 gtccacatcgaggctagaacaaccccacaagtgagagagacaccacactct 624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 18603127 - 18603177
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||| ||||| |||||||||||||  |||||||||    
T  18603127 gtccacatcgaggctagaactaccacacaagcaagagagatgccacactct 18603177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 623986 - 623919
Alignment:
Q  229 gaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| | ||||||| ||| |||| ||||||||||||||| | ||||  ||||||||||||||||||    
T  623986 gaggagctcgggggaccgtctacattgaggctagaacaaccccacaagtgagagagacaccacactct 623919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 12662650 - 12662709
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| | ||||||||||||||||| |||| | ||||||||| || |||||||||||    
T  12662650 agggggaccgaccacatcgaggctagaagaaccccacaagcaagaaaggcaccacactct 12662709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 13415774 - 13415817
Alignment:
Q  253 tcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||| | |||||||||||||| |||||||||    
T  13415774 tcgaggctagaacaaccgcacaagcaagagagacgccacactct 13415817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 32487552 - 32487494
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||||||||||||||||||||||||  |||||||||| ||  ||||||||    
T  32487552 gggggaccatccacatcgaggctagaacaaccacataagcaagagatacgtcacactct 32487494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 33747922 - 33747872
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||| |||||||||||||| |  ||| |||||||||||||||||||    
T  33747922 gtccacatcaaggctagaacaaccgcataaggaagagagacaccacactct 33747872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 38427366 - 38427320
Alignment:
Q  250 acatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||| |||||||||| | |||||||||||||| |||||||||    
T  38427366 acatcgaggttagaacaaccgcacaagcaagagagacgccacactct 38427320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 301117 - 301052
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| || |||| || ||| ||||| || ||||| |||| ||||||||||||||||||||||||    
T  301117 ggagttcggaggaccgttcacgtcgagacttgaacagccacacaagcaagagagacaccacactct 301052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 26075157 - 26075218
Alignment:
Q  235 ttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||  |||||||||||||||| ||||||||| |  |||||||||||  ||||||||    
T  26075157 ttagggggatagtccacatcgaggctaaaacaaccacacttgcaagagagacgacacactct 26075218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 41370521 - 41370458
Alignment:
Q  233 agttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41370521 agttcgggggaccgtccacatcgaggctagaacaaccactcaagcaagagagacactacactct 41370458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 54343005 - 54343063
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343005 gggggaccatccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 54343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 36629394 - 36629338
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36629394 gggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactct 36629338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 25483496 - 25483437
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25483496 agggagaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactct 25483437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 39792860 - 39792915
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39792860 ggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactct 39792915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 23817678 - 23817736
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  23817678 gggggaccgtccacatcgaggctagaacaaccacactagcaagagagacaccacactct 23817736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 39404177 - 39404119
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39404177 gggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactct 39404119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 18932746 - 18932804
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| || ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  18932746 gggggaccgtacacatcgaggctataacaaccactcaagtaagagagacaccacactct 18932804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 22028366 - 22028424
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  22028366 gggggaccgtccacattgaggctagaacaacctcacaagcaagagagacaccacactct 22028424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 49076829 - 49076886
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  49076829 ggggacagtccacatcgaggctagaacaaccgcacaagcaagaaagacaccacactct 49076886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 54017585 - 54017650
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||| ||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  54017585 ggagctagggagaccgtccacatcgaggctagaacaaccacataagcaagagagacatcacactct 54017650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 1731646 - 1731702
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  1731646 gggaccgtccacattgaggctagaacaaccacacaagcaagagaaacaccacactct 1731702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 39404555 - 39404503
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  39404555 gggaccgttcacatcgaggctagaacaaccacacaagcaagagagacaccaca 39404503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 44620836 - 44620760
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| |||| | ||||||| ||||||||||||| || ||||||| | ||||||||||||| ||||||||||    
T  44620836 ggatcatgaggggagcttgggggaccgtccacatcgaggatataacaaccgcacaagcaagagagaaaccacactct 44620760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 50459878 - 50459822
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  50459878 gggaccgtgcacatcgaggctagaacaaccacacaagcaagagagacaccacgctct 50459822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 3340958 - 3340908
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  3340958 gtccacatcgaggctagaacaaccccacaagcaagaaagacaccacactct 3340908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 10246070 - 10246020
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  10246070 gtccacatcgaggctagaacaaccagacaagcaagggagacaccacactct 10246020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 32941124 - 32941178
Alignment:
Q  242 gactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  ||||||||    
T  32941124 gactgtccacatcgaggctagaacaaccgcacaagcaagagagacgtcacactct 32941178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 36608658 - 36608716
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||||| | ||  ||||||||||||||||||    
T  36608658 gggggaccgtccacatcgaggctagaacaaccacactagtgagagagacaccacactct 36608716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 43827598 - 43827540
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||| |||||||||| | |||| |||||||||||||||||||    
T  43827598 gggggaccgtccacatcgaggttagaacaaccgcacaagtaagagagacaccacactct 43827540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 44621176 - 44621103
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||    |||||| ||||||||||||||||||| |||| | ||||||||||| ||||||||||||    
T  44621176 ggatcatgagaggagc---ggggaccgtccacatcgaggctagaataaccgcacaagcaagagaaacaccacactct 44621103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 50002585 - 50002527
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| | |||||||||||||||||||||| | |||| |||||||||||||||||||    
T  50002585 gggggaccgcccacatcgaggctagaacaaccgcacaagtaagagagacaccacactct 50002527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 50630740 - 50630810
Alignment:
Q  226 tgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||| |||| |||| | |||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  50630740 tgaggggagctaggcggaccgcccacatcgaggctaaaacaaccgcacaagcaagagagacaccacactct 50630810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 11702281 - 11702341
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagaga 283  Q
    ||||||| ||||  ||||||||||| ||||||||||||||||||||| | |||||||||||    
T  11702281 tcatgaggggagcgagggggactgttcacatcgaggctagaacaaccgcacaagcaagaga 11702341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 54108686 - 54108638
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  54108686 ccacattgaggctagaacaaccacacaagcaagatagacaccacactct 54108638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 52884844 - 52884797
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  52884844 cacatcgaggctagatcaaccgcacaagcaagagagacaccacactct 52884797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 54109060 - 54109013
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||||    
T  54109060 cacatcgaagctagaacaaccgcacaagcaagagagacaccacactct 54109013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 20825995 - 20825937
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||| |||||||||||||| |  ||| |||||| ||||||||||||    
T  20825995 gggggactgtccacatcaaggctagaacaaccgcataaggaagagaaacaccacactct 20825937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 41370809 - 41370763
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  41370809 gtccacatcgaggttagaacaaccactcaagtaagagagacatcaca 41370763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 43174300 - 43174242
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||| ||||| |||||||||| ||||  ||||||||||||||||||    
T  43174300 gggggaccgtccacatcaaggcttgaacaaccacacaagtgagagagacaccacactct 43174242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 44620527 - 44620454
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||    |||||| ||||||||| ||| |||||||||||| ||||||||||| ||| ||||||||    
T  44620527 ggatcatgagaggagc---ggggaccgtccacatcaaggttagaacaaccacacaagcaagagaaacatcacactct 44620454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 54936354 - 54936297
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||||||||||||||   ||  ||||||||||||||||||    
T  54936354 gggggactgtccacatcgaggctagaacaaccac-atagtgagagagacaccacactct 54936297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 55933121 - 55933179
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||    |||| |||||||||||||||||||    
T  55933121 gggggaccgtccacatcgaggctagaacaactgtacaagtaagagagacaccacactct 55933179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 3271948 - 3271915
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccac 271  Q
    ||||||||||||||||||||||||||||||||||    
T  3271948 gggggactgtccacatcgaggctagaacaaccac 3271915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 19504842 - 19504797
Alignment:
Q  251 catcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  19504842 catcgaggctagaacaaccacacaagcaagatagacgccacactct 19504797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 45489702 - 45489767
Alignment:
Q  229 gaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    |||||||| ||||||  | |||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  45489702 gaggagtttgggggatcggccacatcgagactagaacaaccatgcaagcgagagagacaccacact 45489767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 16889535 - 16889591
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||||||||| |||||||| ||| |||| ||||||||||||| |||||    
T  16889535 gggaccgtccacatcgaggttagaacaatcacacaaggaagagagacaccatactct 16889591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 22027960 - 22028012
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    |||||||||||||||||| ||| |||||||||  |||| ||||||||||||||    
T  22027960 gggactgtccacatcgagactaaaacaaccacataagcgagagagacaccaca 22028012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 19895445 - 19895406
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagaca 287  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  19895445 ccacatcgaggctagaacaaccgcacaagcaagagagaca 19895406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 22183261 - 22183319
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||||||||||||||   ||||  |||||||| |||||||||    
T  22183261 gggggaccgtccacatcgaggctagaacaaccgtacaagtgagagagacgccacactct 22183319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 23817460 - 23817498
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagag 284  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  23817460 gtccacatcgaggctagaacaaccacactagcaagagag 23817498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 34004567 - 34004640
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||| | ||| ||| || ||||||||||||||||||||| | ||||  ||||||||  ||||||||    
T  34004567 tcatgagaggagctcgggagaccgttcacatcgaggctagaacaaccgcacaagggagagagacggcacactct 34004640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 36572177 - 36572120
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| || |||||||||||| |||||||| | ||||| |||||||||||| |||||    
T  36572177 ggggaccgttcacatcgaggcttgaacaaccgcacaagcgagagagacaccatactct 36572120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 45489338 - 45489387
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| ||| | ||||| ||||||| ||||||||    
T  45489338 tccacatcgaggctagaacaatcacactagcaaaagagacatcacactct 45489387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 34646648 - 34646704
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||| | |||||||||||||||| ||  | ||||||||||||||||||    
T  34646648 gggaccgtccacaacaaggctagaacaaccacacagaccagagagacaccacactct 34646704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 39698944 - 39698988
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagaga 285  Q
    ||||||||||||||||| |||||| |||| | |||||||||||||    
T  39698944 ggactgtccacatcgagactagaataaccgcacaagcaagagaga 39698988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 6422270 - 6422211
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6422270 agggggacagtccacatcgaggctagaacaaccacacaagcaagagagacaccacactct 6422211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 6421544 - 6421486
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  6421544 gggggaccgtccacatcgagactagaacaaccgcacaagcaagagagacaccacactct 6421486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 14745666 - 14745724
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||| |||||||||    
T  14745666 gggggactgtccacatcgaggctagaacaaccacacttgcaagagagacgccacactct 14745724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 15511502 - 15511552
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  15511502 gtccacatcgagactagaacaaccacacaagcaagagagacaccacactct 15511552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 36178612 - 36178662
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  36178612 gtccacatagaggctagaacaaccacacaagcaagagagacaccacactct 36178662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 37106083 - 37106025
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  37106083 gggggaccgtccacatcgaggctagaacaaccgtacaagcaagagagacaccacactct 37106025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 962764 - 962699
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||| ||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||    
T  962764 ggagttcgggagaccgtccacatcgaggctagaacaaccacacaagcaagagtgacaacacactct 962699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 6421905 - 6421832
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||| | ||||||| |||||||||||||| ||||||||||| ||||  ||||||||||||||||||    
T  6421905 tcatgaggggagctcgggggaccgtccacatcgaggccagaacaaccacacaagttagagagacaccacactct 6421832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 5542606 - 5542682
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| | |||| | ||||||| |||||||||||| || |||||||| | ||||||||||||||||||||||||    
T  5542606 ggatcatggggggagctcgggggaccgtccacatcgagacttgaacaaccgcacaagcaagagagacaccacactct 5542682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 36005883 - 36005935
Alignment:
Q  242 gactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  36005883 gactgtccacatcgaggctagaacaaccccacaagcaagagagacgccacact 36005935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 1770040 - 1769993
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  1770040 cacatcgaggctagaacaacctcacaagcaagagagacaccacactct 1769993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 3673228 - 3673169
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| |||||||||||||||||||||||||| | || |||||||||| ||||||||    
T  3673228 agggggaccgtccacatcgaggctagaacaaccacactagtaagagagacatcacactct 3673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 36178170 - 36178228
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||| |||||||||||| ||||||||| |||||||||||| |||||||||||    
T  36178170 gggggaccgtctacatcgaggctataacaaccacacaagcaagagaggcaccacactct 36178228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 41283474 - 41283532
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  41283474 gggggaccgtccacatcaaggctagaacaaccacacaaacaagagagacgccacactct 41283532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 42514808 - 42514750
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | |||| ||||||||| |||||||||    
T  42514808 gggggaccgtccacatcgaggctagaacaaccccacaagtaagagagacgccacactct 42514750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 23346410 - 23346337
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||| | ||| ||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||    
T  23346410 tcatgaggggagctcgggcgaccgtccacatctaggctagaacaaccgcacaagcaagagagacatcacactct 23346337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 35580716 - 35580781
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| |||||||| |||||||||||||||||||||||| | ||| |||||||||| || ||||||    
T  35580716 ggagtcagggggaccgtccacatcgaggctagaacaaccccacaaacaagagagacgccgcactct 35580781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 23960402 - 23960362
Alignment:
Q  155 tttcaatcgatttgaatgttctagattgtcgtcatatcact 195  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  23960402 tttcaatcgatttgaatgttcaagattgtcgtcatatcact 23960362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 23960402 - 23960362
Alignment:
Q  47 tttcaatcgatttgaatgttctagattgtcgtcatatcact 87  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  23960402 tttcaatcgatttgaatgttcaagattgtcgtcatatcact 23960362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 40163383 - 40163427
Alignment:
Q  250 acatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||    
T  40163383 acatcgaggttagaacaaccacacaagcaagagagacaccacact 40163427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 3672861 - 3672802
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| || |||||||||||| ||||||||||||| |||  |||||||||||||||||||    
T  3672861 aggggaaccgtccacatcgagactagaacaaccacacaattaagagagacaccacactct 3672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 6713141 - 6713078
Alignment:
Q  233 agttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||| |||||||||||||||||||||| | |  |||||||||||||| ||||||||    
T  6713141 agttcgggggaccgtccacatcgaggctagaacaatcccataagcaagagagacatcacactct 6713078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 37106344 - 37106289
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  37106344 ggaccgtccacatcgaggctagaacaatcgcacaagcaagagaaacaccacactct 37106289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 40734042 - 40733983
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| |||||||||||| || |||||||||| ||||| ||| ||||||||||||||    
T  40734042 agggggaccgtccacatcgagacttgaacaaccacacaagcgagacagacaccacactct 40733983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 5543005 - 5543055
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||| |||||||| | ||||||| ||||||||||||||||    
T  5543005 gtccacatcgaggcttgaacaaccgcacaagcaatagagacaccacactct 5543055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 15880414 - 15880364
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  15880414 gtccacatcgaggctaaaacaaccgcacaagcaagagagacgccacactct 15880364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 29676687 - 29676630
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||||||||||||| | ||| |||| | ||||||||||||||||||||||||    
T  29676687 ggggaccgtccacatcgaggtttgaataaccccacaagcaagagagacaccacactct 29676630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 40733677 - 40733618
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||  ||||||||||| || |||| ||||| ||||| ||||||||||||||||||    
T  40733677 agggggaccatccacatcgagacttgaactaccacacaagcgagagagacaccacactct 40733618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 6421777 - 6421727
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||  |||||||||| ||||  ||||||||||||||||||    
T  6421777 gtccacatcgaggccggaacaaccacacaagttagagagacaccacactct 6421727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 7598752 - 7598702
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||| ||| |||||||||| ||||  ||||||||||||||||||    
T  7598752 gtccacatcgatgcttgaacaaccacacaagtgagagagacaccacactct 7598702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 33731795 - 33731749
Alignment:
Q  250 acatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||| |  ||||||||||||||||| |||||    
T  33731795 acatcgaggctagaacaaccgcataagcaagagagacaccatactct 33731749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 40679636 - 40679686
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||| ||||||||||| | |||| ||||||||| |||||||||    
T  40679636 gtccacatcgagactagaacaaccccacaagtaagagagacgccacactct 40679686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 16591038 - 16590993
Alignment:
Q  242 gactgtccacatcgaggctagaacaaccactcaagcaagagagaca 287  Q
    |||||||||||| ||||||||||||||| | |||| ||||||||||    
T  16591038 gactgtccacattgaggctagaacaaccccacaagtaagagagaca 16590993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 14745285 - 14745325
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccac 271  Q
    |||||| | |||| |||||||||||||||||||||||||||    
T  14745285 ggagtttgagggattgtccacatcgaggctagaacaaccac 14745325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 38796619 - 38796671
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||| ||| ||||||||||| |||||||||| ||||||| |||||| |||||    
T  38796619 gggaccgtcgacatcgaggcttgaacaaccacacaagcaatagagacgccaca 38796671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 146 - 200
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  146 gggggaccgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 513 - 571
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  513 gggggaccttccacatcgaggctagaaaaaccactcaagcaagaaagacaccacactct 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 22303954 - 22304012
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22303954 gggggacaatccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 22304012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 22304730 - 22304670
Alignment:
Q  236 tagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  22304730 tagggggactgtccacatcgagactagaacaaccgcacaagcaagagagacaccacactct 22304670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 37990638 - 37990696
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  37990638 gggggaccgtccacatcgaggctagaacaatcacacaagcaagagagacaccacactct 37990696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 54018189 - 54018255
Alignment:
Q  230 aggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  54018189 aggagtcagggggaccgcccacatcgaggctagaacaaccacacaagcatgagagacaccacactct 54018255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 3135438 - 3135511
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||| |||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  3135438 tcatgaggagagtcagggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactct 3135511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 37990978 - 37991034
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  37990978 gggaccgtccacatcgaggctagaacaaccacataagcaagagagacaccacactct 37991034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 15773010 - 15772955
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  15773010 ggaccgtccacatcgaggttagaacaaccacacaagcaagagagacaccacactct 15772955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 25755568 - 25755497
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||| |||||| |||||||  ||||||||||||||||||||||| | |||||||||||||| |||||||    
T  25755568 tcatgaggggagttcgggggaccatccacatcgaggctagaacaaccgcacaagcaagagagacgccacact 25755497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 21832343 - 21832397
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccac 291  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  21832343 agggggactgtccacatcgaggctagaacaaccagacaagcaagagagacgccac 21832397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 39934963 - 39935012
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39934963 tccacatcgaggctagaacaaccacacaagcaagagagacatcacactct 39935012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 42342082 - 42342147
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| || |||| |||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  42342082 ggagttcggaggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactct 42342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 22304354 - 22304302
Alignment:
Q  236 tagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacac 288  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  22304354 tagggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacac 22304302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 32589880 - 32589804
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||  ||||  |||||||| |||||||||||| ||||||||||||| ||||||||||||||| | ||||||    
T  32589880 ggatcatgaagggagcgagggggaccgtccacatcgagcctagaacaaccacacaagcaagagagacatcgcactct 32589804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 53577533 - 53577465
Alignment:
Q  228 agaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||| |||||||  |||||| |||||||||||||||||| |  |||||||||||||||||||||    
T  53577533 agaggagttcgggggaccatccacaccgaggctagaacaaccacacttgcaagagagacaccacactct 53577465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 8328441 - 8328374
Alignment:
Q  226 tgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacac 293  Q
    |||| |||||| | ||||| |||||||||||||||| ||||||| | |||||||||||||||||||||    
T  8328441 tgaggggagttcgtgggaccgtccacatcgaggctaaaacaaccccacaagcaagagagacaccacac 8328374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 15773371 - 15773293
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaag--agagacaccacactct 296  Q
    |||||||||| ||||||||| |||  ||||||||||||| |||||||||||| ||||||||  ||||||| ||||||||    
T  15773371 ggatcatgaggggagttaggaggatcgtccacatcgaggttagaacaaccacacaagcaagcaagagacatcacactct 15773293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 32462910 - 32462957
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  32462910 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 32462957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 43346793 - 43346848
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  43346793 ggaccgtccacatagaggctagaacaaccgcacaagcaagagagacaccacactct 43346848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 54017814 - 54017873
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| | ||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  54017814 agggggaccgcccacatcgaagctagaacaaccacacaagtaagagagacaccacactct 54017873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 50612446 - 50612504
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||||||| ||||||||    
T  50612446 gggggaccgtccacgtcgaggatggaacaaccactcaagcaagagagacatcacactct 50612504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 33803244 - 33803309
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||  || ||||| |||||||||    
T  33803244 ggagtttgggggaccgtccacatcgaggctagaacaaccacacaagagagggagacgccacactct 33803309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 35946681 - 35946625
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||| ||||||||||||||||||||||   | ||||||||||||||||||||||    
T  35946681 gggggaccgtccacatcgaggctagaacaattgcacaagcaagagagacaccacact 35946625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 42342386 - 42342445
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| |||||||| ||||||||||||||| | ||||||||||||||  ||||||||    
T  42342386 agggggaccgtccacattgaggctagaacaaccgcacaagcaagagagacgtcacactct 42342445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 12114561 - 12114619
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| | |||||||| ||||||||||||| | |||| |||||||||||||||||||    
T  12114561 gggggaccgaccacatcgtggctagaacaaccgcacaagtaagagagacaccacactct 12114619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 29644901 - 29644959
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||| ||||||| |  ||||||||||||| |||||||||    
T  29644901 gggggaccgtccacatcgaggctaaaacaaccgcataagcaagagagacgccacactct 29644959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 31190160 - 31190110
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||||||||||||||   ||||||||||||||||||||||||    
T  31190160 gtccaaatcgaggctagaacaacccgacaagcaagagagacaccacactct 31190110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 41359490 - 41359548
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||| ||||||||||||||| | ||||||| |||||| |||||||||    
T  41359490 gggggaccgtccacattgaggctagaacaaccgcacaagcaaaagagacgccacactct 41359548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 41359764 - 41359818
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||||| | |||||||||||||||||||||||| ||||| |||||||| |||||    
T  41359764 gggggaccgcccacatcgaggctagaacaaccacacaagcgagagagacgccaca 41359818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 39914425 - 39914353
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| | |||||||||| ||||| |||||||||||||||||||| |  |||  ||||||||||||||||||    
T  39914425 tcatgagtgaagttaggggg-ctgtctacatcgaggctagaacaaccgcataagtgagagagacaccacactct 39914353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 1634302 - 1634346
Alignment:
Q  226 tgagaggagttagggggactgtccacatcgaggctagaacaacca 270  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||    
T  1634302 tgaggggagctagggggaccgtccacatcgaggctagaacaacca 1634346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 9239990 - 9239940
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaacca 270  Q
    |||||||||| |||| | ||||||| ||||||||||||||||||| |||||    
T  9239990 ggatcatgaggggagcttgggggaccgtccacatcgaggctagaaaaacca 9239940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 25739424 - 25739482
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||| ||| | ||||| ||||||||  ||||||||    
T  25739424 gggggaccgtccacatcgaggctagaactaccgcacaagctagagagacgtcacactct 25739482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 43978864 - 43978922
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||| |||||||| ||| ||||  |||||||| |||||||||    
T  43978864 gggggacagtccacatcgaggttagaacaaacacacaagtgagagagacgccacactct 43978922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 29644573 - 29644638
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||  |||||||||| |||| ||||||| |  ||||||||||||| |||||||||    
T  29644573 ggagtttgggggaccatccacatcgaagctaaaacaaccgcataagcaagagagacgccacactct 29644638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 37726662 - 37726625
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaac 268  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  37726662 ggagttcgggggaccgtccacatcgaggctagaacaac 37726625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 45395661 - 45395710
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||| ||||| | ||||  ||||||||||||||||||    
T  45395661 tccacatcgaggctagagcaaccccacaagtgagagagacaccacactct 45395710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 54017540 - 54017605
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||| | |||||||||||| | ||||| |||  ||| || ||||||||||||||||    
T  54017540 ggagttagggggaccgaccacatcgaggccaaaacaatcacataagtaatagagacaccacactct 54017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 11662108 - 11662053
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||||||||||||||||||||||| |||   ||||||||||| ||||||    
T  11662108 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactct 11662053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 22303656 - 22303716
Alignment:
Q  236 tagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||| ||| |||||||||||||||||| | | |||| |||||| ||||||||||||    
T  22303656 tagggagaccgtctacatcgaggctagaacaatcgcacaagtaagagaaacaccacactct 22303716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 32462540 - 32462615
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| |||||| ||||| | ||| |||||||||||| ||||| | | ||| |||||||||| |||||||||    
T  32462540 ggatcatgaggggagtttgggggcc-gtctacatcgaggctaaaacaatcccacaaacaagagagaccccacactct 32462615  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 30441240 - 30441186
Alignment:
Q  242 gactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  30441240 gactgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 30441186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 40579268 - 40579326
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  40579268 gggggacagtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 40579326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 3669853 - 3669788
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||  ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3669853 ggagctagggggaccatccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 3669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 5916025 - 5915968
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  5916025 ggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 5915968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 34835026 - 34834977
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34835026 tccacatcgaggctagaacaaccacacaagcaagagagacaccacactct 34834977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 3670211 - 3670161
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3670211 gtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 3670161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 6876861 - 6876919
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  6876861 gggggaccgtccacatcgaggctagaacaaccacacaaacaagagaaacaccacactct 6876919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 8919143 - 8919201
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  8919143 gggggaccgtccacatcgaagctagaacaaccacacaagcaaaagagacaccacactct 8919201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 9482591 - 9482661
Alignment:
Q  226 tgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||| ||| || |||||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  9482591 tgaggggagttatgggaaccgtccacatcgaggctagaacaaccgcacaagcaagagagataccacactct 9482661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 40518230 - 40518172
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  40518230 gggggaccgtccacatcaaggctagaacaaccacacaagcaagagagacgccacactct 40518172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 6651660 - 6651595
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||  |||||||||||| |||||||| | | ||||||||||||||||||||||||    
T  6651660 ggagttagggggaccatccacatcgaggttagaacaatcgcacaagcaagagagacaccacactct 6651595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 3038292 - 3038347
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  3038292 ggaccgtccacatcgaggctagaacaaccacacaagcaagagagatgccacactct 3038347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 34835369 - 34835310
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||| ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  34835369 agggggaccgtctacatcgaggctagaataaccacacaagcaagagtgacaccacactct 34835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 34835635 - 34835576
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||| ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  34835635 agggggaccgtctacatcgaggctagaataaccacacaagcaagagtgacaccacactct 34835576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 34835901 - 34835842
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||| ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  34835901 agggggaccgtctacatcgaggctagaataaccacacaagcaagagtgacaccacactct 34835842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 45122784 - 45122726
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactc 295  Q
    ||||||||  |||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  45122784 agggggaccttccacatcgaggcttgaacaaccacacaagcaagagagacgccacactc 45122726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 1014253 - 1014302
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||||||    
T  1014253 tccacatcgaggctagaacaaccgcacaagcaggagagacaccacactct 1014302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 20870557 - 20870630
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||  ||| |||| ||||| ||| ||| |||||||||||| ||||||||||||||||||||||||    
T  20870557 tcatgaggggagccaggaggaccgtccatatcaaggttagaacaaccacacaagcaagagagacaccacactct 20870630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 41129147 - 41129090
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactc 295  Q
    ||||||| ||||||||||||| | |||||||||| |||| ||||||||||||||||||    
T  41129147 gggggaccgtccacatcgaggtttgaacaaccacacaagtaagagagacaccacactc 41129090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 41416203 - 41416239
Alignment:
Q  47 tttcaatcgatttgaatgttctagattgtcgtcatat 83  Q
    |||||||||||||||||||||||||||||||||||||    
T  41416203 tttcaatcgatttgaatgttctagattgtcgtcatat 41416239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 41416203 - 41416239
Alignment:
Q  155 tttcaatcgatttgaatgttctagattgtcgtcatat 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  41416203 tttcaatcgatttgaatgttctagattgtcgtcatat 41416239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 45121649 - 45121713
Alignment:
Q  232 gagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||| |||||||||||||||||||||||||||| |  ||| |||||||| | ||||||||    
T  45121649 gagttagggagactgtccacatcgaggctagaacaaccccataagtaagagagatatcacactct 45121713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 45122067 - 45122114
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||    
T  45122067 cacatcgaggctagaacaaccccacaagtaagagagacaccacactct 45122114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 9483194 - 9483244
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | | ||||| ||||||||||||||||    
T  9483194 gtccacatcgaggctagaacaaccgcacgagcaaaagagacaccacactct 9483244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 37544497 - 37544547
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | |||| |||| ||||||||||||||    
T  37544497 gtccacatcgaggctagaacaaccgcacaagtaagaaagacaccacactct 37544547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 6732045 - 6731996
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||| |||||||||| |  |||||||||||||||||||||||    
T  6732045 tccacatcgaggttagaacaaccgcataagcaagagagacaccacactct 6731996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 9608896 - 9608847
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactc 295  Q
    |||||||||||||||||||||||| | | |||||||||||| ||||||||    
T  9608896 gtccacatcgaggctagaacaacctcactagcaagagagacgccacactc 9608847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 43274634 - 43274691
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactc 295  Q
    ||||||| ||||||||||||||| |||||||| |  ||| ||||||||||||||||||    
T  43274634 gggggaccgtccacatcgaggctggaacaaccccataagtaagagagacaccacactc 43274691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 3037968 - 3038016
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagac 286  Q
    ||||||| |||||||||||||||||||||||||| ||||  ||||||||    
T  3037968 gggggaccgtccacatcgaggctagaacaaccacacaagatagagagac 3038016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 33113368 - 33113424
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| |||| ||| ||| ||||||||||||| | ||||||||||||||||||||||    
T  33113368 gggaccgtccgcattgagcctagaacaaccacactagcaagagagacaccacactct 33113424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 40518738 - 40518683
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||| ||||||||||||||||| |||||||||| |||  ||||||||    
T  40518738 ggaccgtccacattgaggctagaacaaccacacaagcaagagtgacgtcacactct 40518683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 45123166 - 45123107
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| ||||||||||||  |||||||||| | |||  |||||||||||||||||||    
T  45123166 agggggaccgtccacatcgagattagaacaaccccacaaataagagagacaccacactct 45123107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 12284043 - 12283973
Alignment:
Q  226 tgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||| ||| ||   |||||| ||||||||||||||||| ||||  |||||||||| |||||||    
T  12284043 tgagaggagttatgggaaccacccacatagaggctagaacaaccacacaagtgagagagacactacactct 12283973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 25561823 - 25561861
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagaga 285  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  25561823 tccacatcgaggctagagcaaccacacaagcaagagaga 25561861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 40579513 - 40579563
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||| ||||||||||   ||||||| ||||||||||||||||    
T  40579513 gtccacatcgaggatagaacaaccgtacaagcaatagagacaccacactct 40579563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 1013879 - 1013928
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||| | |||| || ||||||| ||||||||    
T  1013879 tccacatcgaggctagaacaaccgcacaagtaaaagagacaacacactct 1013928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 9309140 - 9309107
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccac 271  Q
    ||||||| ||||||||||||||||||||||||||    
T  9309140 gggggaccgtccacatcgaggctagaacaaccac 9309107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 9309513 - 9309480
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccac 271  Q
    ||||||| ||||||||||||||||||||||||||    
T  9309513 gggggaccgtccacatcgaggctagaacaaccac 9309480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 1513914 - 1513970
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||| ||||||||||||||||||| |||| | || | |||||||| ||||||||    
T  1513914 gggggaccgtccacatcgaggctagaataaccccacatgtaagagagataccacact 1513970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 41142532 - 41142474
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  41142532 gggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactct 41142474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 32168698 - 32168755
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  32168698 ggggactgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactct 32168755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 26661515 - 26661579
Alignment:
Q  232 gagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  26661515 gagttagggggaccgtccatatcgaggcttgaacaaccacacaagcgagagagacaccacactct 26661579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 41157150 - 41157092
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  41157150 gggggaccgcccacatcgaggctagaacaaccacacaagcaatagagacaccacactct 41157092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 44290823 - 44290881
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||    
T  44290823 gggggaccgtccacatcgaggctagaacaaccgcacaagcaagagatacaccacactct 44290881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 3537599 - 3537656
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||    
T  3537599 ggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactct 3537656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 41759641 - 41759584
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  41759641 ggggaccgtccacatcaaggctagaacaaccacataagcaagagagacaccacactct 41759584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 37555878 - 37555830
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  37555878 ccacatcgaggcttgaacaaccacacaagcaagagagacaccacactct 37555830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 37556260 - 37556212
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  37556260 ccacatcgaggcttgaacaaccacacaagcaagagagacaccacactct 37556212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 41157524 - 41157476
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  41157524 ccacatcgaggctagaacaaccacacaagcaagacagacaccacactct 41157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 24600313 - 24600371
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||||||||||||||||||||||||  | ||| ||||||||||||||||||    
T  24600313 ggggaactgtccacatcgaggctagaacaaccatactagcgagagagacaccacactct 24600371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 34649597 - 34649539
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||| || ||||||    
T  34649597 gggggaccgtccacatcgaggctagaacaaccacactagcaagagagacgcctcactct 34649539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 45493973 - 45494031
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  45493973 gggggaccgtccacatcgaggcttgaacaaccacataaggaagagagacaccacactct 45494031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 11977113 - 11977045
Alignment:
Q  228 agaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| | ||||||| |||||||||||||||||||| ||| | |  |||||||||||||||||||||    
T  11977113 agaggagctcgggggaccgtccacatcgaggctagaactaccgcacttgcaagagagacaccacactct 11977045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 14319032 - 14318968
Alignment:
Q  232 gagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||| |||||||| ||||||||||||||| | |||  |||||||||||||||||||    
T  14319032 gagttcgggggaccgtccacattgaggctagaacaaccgcacaaataagagagacaccacactct 14318968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 37850582 - 37850657
Alignment:
Q  220 ggatcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| |||| |||||| || |||||||||||||||||| ||||| | ||||  ||||||||||||||||||    
T  37850582 ggatcatgaggggagctagggg-accgtccacatcgaggctagagcaaccgcacaagtgagagagacaccacactct 37850657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 11977444 - 11977381
Alignment:
Q  233 agttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||| |||||||||||||||||||||||| | |  |||||||||||| ||||||||    
T  11977444 agttcgggggaccgtccacatcgaggctagaacaaccgcacttgcaagagagacatcacactct 11977381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 40082562 - 40082507
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||||||||||||||||| | | ||||||||||||| ||||||||||    
T  40082562 ggactatccacatcgaggctagaacaaacgcacaagcaagagagataccacactct 40082507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 31767160 - 31767218
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||| ||||  ||||||||    
T  31767160 gggggaccgtccacatcgagtctagaacaaccacacaagcaagatagacgtcacactct 31767218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 44290457 - 44290515
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||||||||||||||   ||||||||| |||||||| |||||    
T  44290457 gggggaccgtccacatcgaggctagaacaaccgtacaagcaagaaagacaccatactct 44290515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 45084535 - 45084477
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||| |||||||| |||||||||| | ||||||||||||||||||| ||||    
T  45084535 gggggaccgtccgcatcgaggttagaacaaccgcacaagcaagagagacaccactctct 45084477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 48588495 - 48588545
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| | |||| |||||||||||| ||||||    
T  48588495 gtccacatcgaggctagaacaaccgcacaagtaagagagacaccgcactct 48588545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 50052023 - 50052080
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||| |||||||| |||  || ||||||||||||||||||||    
T  50052023 gggggactgtccacatcgaggttagaacaa-cacataaacaagagagacaccacactct 50052080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 5319965 - 5320022
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||| |||| |||||||||||||||||  ||||||||||||||| |||||||    
T  5319965 ggggaccgtctacattgaggctagaacaaccacataagcaagagagacactacactct 5320022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 21378059 - 21378116
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||| ||||||||||||||||| ||||||| | |||| |||||||||    
T  21378059 ggggaccgtccacattgaggctagaacaaccacacaagcaatatagacgccacactct 21378116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 39066193 - 39066257
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| ||||||| ||| ||||| ||||||||||||||||  ||| |||||||||||||||||||    
T  39066193 ggagtttgggggaccgtc-acatcaaggctagaacaaccacataagtaagagagacaccacactct 39066257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 50051681 - 50051745
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||||| ||||||||||| |||||||||| |||  || ||||||||||||||||||||    
T  50051681 ggagctagggggaccgtccacatcgatgctagaacaa-cacataaacaagagagacaccacactct 50051745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 29798364 - 29798300
Alignment:
Q  232 gagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||| ||| | ||||||| |||||||||||| |  |||||||||||||||||||||    
T  29798364 gagtttgggggaccgtctatatcgaggttagaacaaccacacttgcaagagagacaccacactct 29798300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 9956057 - 9956010
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||| ||||| | ||||||||||||||| ||||||||    
T  9956057 cacatcgaggctagagcaaccgcacaagcaagagagacatcacactct 9956010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 4266798 - 4266853
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| | |||||||||||||||||||||||  |||| |||||||||| ||||||||    
T  4266798 ggggaccgcccacatcgaggctagaacaacca--caagtaagagagacatcacactct 4266853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 26661921 - 26661955
Alignment:
Q  262 gaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| ||||||||||||||||||||||||    
T  26661921 gaacaaccacacaagcaagagagacaccacactct 26661955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 38804370 - 38804412
Alignment:
Q  254 cgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||| | |||||||||||||||| |||||||    
T  38804370 cgaggctagaacaaccgcacaagcaagagagacactacactct 38804412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 3875315 - 3875384
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    ||||||| |||| | || |||| |||||||||||||||||||||||||| | ||  |||||||| |||||    
T  3875315 tcatgaggggagctcggaggaccgtccacatcgaggctagaacaaccacactagtgagagagactccaca 3875384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 24131999 - 24132043
Alignment:
Q  250 acatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    |||||||||||||||||||||| | ||  ||||||||||||||||    
T  24131999 acatcgaggctagaacaaccacactagtgagagagacaccacact 24132043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 1085600 - 1085673
Alignment:
Q  223 tcatgagaggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||  |||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  1085600 tcatgaggggagccagggggaccgtccacatcgaggctagaacaaccacacaagtaagagagacgccacactct 1085673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 37167937 - 37167882
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  37167937 ggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactct 37167882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 45433401 - 45433342
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||| | |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  45433401 agggggaccgaccacatcgaggctagaacaaccccacaagcaagagagacaccacactct 45433342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 28300575 - 28300625
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  28300575 gtccacatcgaggctagaataaccacacaagcaagagagacaccacactct 28300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 37533363 - 37533421
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  37533363 gggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactct 37533421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 47129527 - 47129470
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  47129527 ggggaccgtccacatcgaggctagatcaaccgcacaagcaagagagacaccacactct 47129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 23376 - 23434
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||| |||||||||||||||||| | || |||||||||||||||||||||    
T  23376 gggggaccgtccaaatcgaggctagaacaaccgcacatgcaagagagacaccacactct 23434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 11845350 - 11845292
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||| |||||||||||||||||||  | ||||||||||||||||||||||||    
T  11845350 gggggaccgtctacatcgaggctagaacaactgcacaagcaagagagacaccacactct 11845292  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 30253729 - 30253671
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||||||||| |||||||||| ||||  ||||||||||||||||||    
T  30253729 gggggacagtccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30253671  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 40094773 - 40094831
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| | |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  40094773 gggggaccgaccacatcgaggctagaacaacctcacaagcaagagagacgccacactct 40094831  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 45754862 - 45754816
Alignment:
Q  250 acatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  45754862 acatcgaggcttgaacaaccacacaagcaagagagacaccacactct 45754816  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 30244509 - 30244453
Alignment:
Q  240 gggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||||||||||||||| |||||||||| ||||  ||||||||||||||||||    
T  30244509 gggaccgtccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30244453  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 37533010 - 37533066
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||| ||||||||||||| |||||||| | | ||||||||||||||||||||||    
T  37533010 gggggaccgtccacatcgaggttagaacaagcgcacaagcaagagagacaccacact 37533066  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 9901799 - 9901744
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||| |||||||||||||||| | | ||||||||||||||||||||||    
T  9901799 ggacagtccacaccgaggctagaacaaccgcactagcaagagagacaccacactct 9901744  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 19122879 - 19122832
Alignment:
Q  249 cacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  19122879 cacatcgagactagaacaaccacacaagcaagatagacaccacactct 19122832  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 34218036 - 34218091
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| ||||||||||||||| |||||||||  ||||| ||||||||||||||||||    
T  34218036 ggaccgtccacatcgaggcttgaacaaccatacaagcgagagagacaccacactct 34218091  T

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Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 37532753 - 37532808
Alignment:
Q  241 ggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||| |||||||||||||||||||||||  | ||||| ||||||||||||||||||    
T  37532753 ggaccgtccacatcgaggctagaacaacagcacaagctagagagacaccacactct 37532808  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 6054719 - 6054661
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| ||||||||| |||||||||||||||  |||| | |||||||||||||||||    
T  6054719 gggggaccgtccacatcaaggctagaacaaccatacaagtaggagagacaccacactct 6054661  T

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Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 8128440 - 8128498
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||| |||||||| ||||||||||||||  |||| |||| |||||||||||||    
T  8128440 gggggactgttcacatcgatgctagaacaaccacataagcgagagtgacaccacactct 8128498  T

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Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 22567038 - 22567096
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||||||||||||  |||||||| | ||||||||||||||||||||||||    
T  22567038 gggggaccatccacatcgaggcccgaacaaccccacaagcaagagagacaccacactct 22567096  T

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Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 30244429 - 30244371
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||  |||||||||||||| |||||||||| ||||  ||||||||||||||||||    
T  30244429 gggggaccatccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30244371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 30245314 - 30245256
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||||| |||||| |||||||||| ||||  ||||||||||||||||||    
T  30245314 gggggaccgtccacattgaggcttgaacaaccacacaagtgagagagacaccacactct 30245256  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 7517729 - 7517681
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  7517729 ccacatcgaggctagaacaaccacacaagtgagacagacaccacactct 7517681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 30032726 - 30032679
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagaga 285  Q
    ||||||| ||||||||||||| |||||||||| | |||||||||||||    
T  30032726 gggggaccgtccacatcgaggatagaacaaccgcacaagcaagagaga 30032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 36939741 - 36939788
Alignment:
Q  247 tccacatcgaggctagaacaaccactcaagcaagagagacaccacact 294  Q
    ||||||||||||||||||||||| |  |||||||||| ||||||||||    
T  36939741 tccacatcgaggctagaacaaccgcataagcaagagaaacaccacact 36939788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 24177594 - 24177536
Alignment:
Q  238 gggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||| |||||| |||||||||  |||||| | |||||||||||||| |||||||||    
T  24177594 gggggaccgtccacgtcgaggctaagacaaccgcacaagcaagagagacgccacactct 24177536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 28300245 - 28300310
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||| ||| |||| ||||||||||||||  |||||||||| |  ||||||||||| |||||||||    
T  28300245 ggagtcaggaggaccgtccacatcgaggcccgaacaaccacacttgcaagagagacgccacactct 28300310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 118299 - 118343
Alignment:
Q  239 ggggactgtccacatcgaggctagaacaaccactcaagcaagaga 283  Q
    |||||| ||||||||| | |||||||||||||| |||||||||||    
T  118299 ggggaccgtccacatcaaagctagaacaaccacacaagcaagaga 118343  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 47520 - 47465
Alignment:
Q  237 agggggactgtccacatcgaggctagaacaaccactcaagcaagagagacaccaca 292  Q
    |||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||    
T  47520 agggggaccgtccacatcgaggttagaacaaccgcgcaagcaagagagacaccaca 47465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 5546 - 5498
Alignment:
Q  248 ccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  5546 ccacatcgaggcttgaacaaccccacaagcaagagagacaccacactct 5498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 135069 - 135109
Alignment:
Q  47 tttcaatcgatttgaatgttctagattgtcgtcatatcact 87  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  135069 tttcaatcgatttgaatgttttagattgtcgtcatatcact 135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 135069 - 135109
Alignment:
Q  155 tttcaatcgatttgaatgttctagattgtcgtcatatcact 195  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  135069 tttcaatcgatttgaatgttttagattgtcgtcatatcact 135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 1113 - 1163
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    ||||||||||||||||||||||||||  || |||||||||||||| |||||    
T  1113 gtccacatcgaggctagaacaaccacataaacaagagagacaccatactct 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 1675 - 1715
Alignment:
Q  231 ggagttagggggactgtccacatcgaggctagaacaaccac 271  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  1675 ggagctagggggactgcccacatcgaggctagaacaaccac 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 5133 - 5083
Alignment:
Q  246 gtccacatcgaggctagaacaaccactcaagcaagagagacaccacactct 296  Q
    |||||||||||||||||| ||||| |  |||| ||||||||||||||||||    
T  5133 gtccacatcgaggctagagcaaccgcataagcgagagagacaccacactct 5083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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