View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1115_low_2 (Length: 571)
Name: NF1115_low_2
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_2 |
 | |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0184 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Original strand, 14839 - 15370
Alignment:
| Q |
16 |
atcaaaacaaaaataacttaaacaagtaataacactgtttctttccctaagtcccaccaaaattttcccattgactagccaagtgagatagagtctctat |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| |
|
|
| T |
14839 |
atcaaaacaaaaataagttaaacaagtaataacactgtttctttccctaagtcccaccaaaattttcccattgactagccaagtgtgacaaagtctgtat |
14938 |
T |
|
| Q |
116 |
tgaagaaccttcaccttttactgcattaacagcataatcttttaaactcttcattctttcacgcattctcttaccttcttcctcttccattacacactta |
215 |
Q |
| |
|
||||||||| || |||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
14939 |
tgaagaaccaccatctttaagtgcattagcagcataatcttttaaactcttcattctttcacgcattctcttaccttcttccccttccatcaaacactta |
15038 |
T |
|
| Q |
216 |
actacctttgcaattttctccttttccacaatctcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattg |
315 |
Q |
| |
|
| || |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15039 |
atcacatttgcaatttcatccttttctacaatctcatcatcttcaaatttcaaccttattgccactttaagaccatcacttaacaaaacagcattcattg |
15138 |
T |
|
| Q |
316 |
cttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15139 |
cttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactga |
15238 |
T |
|
| Q |
416 |
atttcgcttaagtatttgaacttgtggtgcccatgatggtaaaatcaagcctttttcttttgttctttccacaaaccctttaggtaaaaaatttaaagga |
515 |
Q |
| |
|
| | | |||||||||| |||||| ||||||||||||| ||||| || ||||||||||| |||||||||| ||||||| |||||||||| || |||||| |
|
|
| T |
15239 |
actatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaacctttttctttggttctttccaaaaaccctataggtaaaaatttcaaagga |
15338 |
T |
|
| Q |
516 |
tcttcatttgtagcttcaagataagcagcact |
547 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |
|
|
| T |
15339 |
tcttcatttgtagattcaagataagctgcact |
15370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 67 - 376
Target Start/End: Complemental strand, 2024 - 1715
Alignment:
| Q |
67 |
tcccaccaaaattttcccattgactagccaagtgagatagagtctctattgaagaaccttcaccttttactgcattaacagcataatcttttaaactctt |
166 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2024 |
tcccaccaaaactttcccattgactagccaactgagacagattctgtattgaagaaccttcatcttttactgcattaacagcataatcttttaaactctt |
1925 |
T |
|
| Q |
167 |
cattctttcacgcattctcttaccttcttcctcttccattacacacttaactacctttgcaattttctccttttccacaatctcatcatcttcaaatttc |
266 |
Q |
| |
|
|||||| ||||||||| | |||||||||||| ||||||| | |||||||| || |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1924 |
cattctatcacgcattgttttaccttcttccccttccatcaaacacttaatcacatttgcagttttatccttttccacaatctcatcatcttcaaatttc |
1825 |
T |
|
| Q |
267 |
aaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccctcttgcatac |
366 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1824 |
aaccttattgccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccctcttgcatac |
1725 |
T |
|
| Q |
367 |
tctccaaaac |
376 |
Q |
| |
|
|||||||||| |
|
|
| T |
1724 |
tctccaaaac |
1715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Complemental strand, 58005 - 57474
Alignment:
| Q |
16 |
atcaaaacaaaaataacttaaacaagtaataacactgtttctttccctaagtcccaccaaaattttcccattgactagccaagtgagatagagtctctat |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| |
|
|
| T |
58005 |
atcaaaacaaaaataagttaaacaagtaataacactgtttctttccctaagtcccaccaaaattttcccattgactagccaagtgtgacaaagtctgtat |
57906 |
T |
|
| Q |
116 |
tgaagaaccttcaccttttactgcattaacagcataatcttttaaactcttcattctttcacgcattctcttaccttcttcctcttccattacacactta |
215 |
Q |
| |
|
||||||||| || |||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
57905 |
tgaagaaccaccatctttaagtgcattagcagcataatcttttaaactcttcattctttcacgcattctcttaccttcttccccttccatcaaacactta |
57806 |
T |
|
| Q |
216 |
actacctttgcaattttctccttttccacaatctcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattg |
315 |
Q |
| |
|
| || |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
57805 |
atcacatttgcaatttcatccttttctacaatctcatcatcttcaaatttcaaccttattgccactttaagaccatcacttaacaaaacagcattcattg |
57706 |
T |
|
| Q |
316 |
cttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57705 |
cttgttctgcaaataaaggccaagctactattggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactga |
57606 |
T |
|
| Q |
416 |
atttcgcttaagtatttgaacttgtggtgcccatgatggtaaaatcaagcctttttcttttgttctttccacaaaccctttaggtaaaaaatttaaagga |
515 |
Q |
| |
|
| | | |||||||||| |||||| ||||||||||||| ||||| || ||||||||||| |||||||||| ||||||| |||||||||| || |||||| |
|
|
| T |
57605 |
actatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaacctttttctttggttctttccaaaaaccctataggtaaaaatttcaaagga |
57506 |
T |
|
| Q |
516 |
tcttcatttgtagcttcaagataagcagcact |
547 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |
|
|
| T |
57505 |
tcttcatttgtagattcaagataagctgcact |
57474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 146 - 547
Target Start/End: Complemental strand, 22586 - 22185
Alignment:
| Q |
146 |
agcataatcttttaaactcttcattctttcacgcattctcttaccttcttcctcttccattacacacttaactacctttgcaattttctccttttccaca |
245 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||| | |||||||| || ||||||||||| |||||||| ||| |
|
|
| T |
22586 |
agcataatctcttaaactcttcattctatcacgcattgccttaccttcttccccttccatcaaacacttaatcacatttgcaattttatccttttctaca |
22487 |
T |
|
| Q |
246 |
atctcatcatcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctacta |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22486 |
atctcatcatcttcaaatttcaaccttatggccactttaagatcattacttaacataactgcattcattgcttgttctgcaaataaaggccaagctacta |
22387 |
T |
|
| Q |
346 |
ttggcaccccctcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaatttcgcttaagtatttgaacttgtggtgc |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
22386 |
ttggcaccccctcttgcatactctccaaaactgaattccatccacaatgacttaaaaatccaccaactgacttttccttaagtatttgaacttgtggtgc |
22287 |
T |
|
| Q |
446 |
ccatgatggtaaaatcaagcctttttcttttgttctttccacaaaccctttaggtaaaaaatttaaaggatcttcatttgtagcttcaagataagcagca |
545 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22286 |
ccatgatggtaaaatcaaacctttttcttttgttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgtagcttcaagataagcagca |
22187 |
T |
|
| Q |
546 |
ct |
547 |
Q |
| |
|
|| |
|
|
| T |
22186 |
ct |
22185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 157 - 547
Target Start/End: Complemental strand, 3321 - 2931
Alignment:
| Q |
157 |
ttaaactcttcattctttcacgcattctcttaccttcttcctcttccattacacacttaactacctttgcaattttctccttttccacaatctcatcatc |
256 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3321 |
ttaaactcttcattctatcacgcattgcaataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatctcatcatc |
3222 |
T |
|
| Q |
257 |
ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
3221 |
ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccc |
3122 |
T |
|
| Q |
357 |
tcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaatttcgcttaagtatttgaacttgtggtgcccatgatggta |
456 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||| | |
|
|
| T |
3121 |
tcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggca |
3022 |
T |
|
| Q |
457 |
aaatcaagcctttttcttttgttctttccacaaaccctttaggtaaaaaatttaaaggatcttcatttgtagcttcaagataagcagcact |
547 |
Q |
| |
|
|||| || ||||||||||| |||||||||| |||||||||||||||||| || | ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
3021 |
aaataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttcaagataagcagcact |
2931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 157 - 539
Target Start/End: Complemental strand, 16566977 - 16566595
Alignment:
| Q |
157 |
ttaaactcttcattctttcacgcattctcttaccttcttcctcttccattacacacttaactacctttgcaattttctccttttccacaatctcatcatc |
256 |
Q |
| |
|
|||||||||||||||| ||||||||| | | ||||||||| ||||||| ||| |||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16566977 |
ttaaactcttcattctatcacgcattgccatgccttcttccccttccataacagacttaatcatctttgcaattttctccttttccacaatgtcatcatc |
16566878 |
T |
|
| Q |
257 |
ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
16566877 |
ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccc |
16566778 |
T |
|
| Q |
357 |
tcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaatttcgcttaagtatttgaacttgtggtgcccatgatggta |
456 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||| | |
|
|
| T |
16566777 |
tcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggca |
16566678 |
T |
|
| Q |
457 |
aaatcaagcctttttcttttgttctttccacaaaccctttaggtaaaaaatttaaaggatcttcatttgtagcttcaagataa |
539 |
Q |
| |
|
|||| || ||||||||||| |||||||||| |||||||||||||||||| || | ||||||||||||| | ||| ||||||| |
|
|
| T |
16566677 |
aaataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatctttaagataa |
16566595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 157 - 539
Target Start/End: Original strand, 16598685 - 16599067
Alignment:
| Q |
157 |
ttaaactcttcattctttcacgcattctcttaccttcttcctcttccattacacacttaactacctttgcaattttctccttttccacaatctcatcatc |
256 |
Q |
| |
|
|||||||||||||||| ||||||||| | | ||||||||| ||||||| ||| |||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16598685 |
ttaaactcttcattctatcacgcattgccatgccttcttccccttccataacagacttaatcatctttgcaattttctccttttccacaatgtcatcatc |
16598784 |
T |
|
| Q |
257 |
ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
16598785 |
ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccc |
16598884 |
T |
|
| Q |
357 |
tcttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaatttcgcttaagtatttgaacttgtggtgcccatgatggta |
456 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||| | |
|
|
| T |
16598885 |
tcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggca |
16598984 |
T |
|
| Q |
457 |
aaatcaagcctttttcttttgttctttccacaaaccctttaggtaaaaaatttaaaggatcttcatttgtagcttcaagataa |
539 |
Q |
| |
|
|||| || ||||||||||| |||||||||| |||||||||||||||||| || | ||||||||||||| | ||| ||||||| |
|
|
| T |
16598985 |
aaataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatctttaagataa |
16599067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 48398587 - 48398551
Alignment:
| Q |
374 |
aactgaattccaaccacaatgacttaaaaatccacca |
410 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
48398587 |
aactgaattccaaccacaatgagttaaaaacccacca |
48398551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 560444 - 560529
Alignment:
| Q |
363 |
atactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaatttcgcttaagtatttgaacttgtggtgccca |
448 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| |||||| || || | ||||| | || ||||||||||||||| |
|
|
| T |
560444 |
atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca |
560529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 894554 - 894606
Alignment:
| Q |
434 |
aacttgtggtgcccatgatggtaaaatcaagcctttttcttttgttctttcca |
486 |
Q |
| |
|
||||||||||||||||||||| | || ||| || |||||||| |||||||||| |
|
|
| T |
894554 |
aacttgtggtgcccatgatggaacaaccaatccattttctttggttctttcca |
894606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 1436 - 1390
Alignment:
| Q |
365 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaa |
411 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1436 |
actctccaaagttgaactccaaccacaatgacttaaaaaaccaccaa |
1390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 8294437 - 8294483
Alignment:
| Q |
365 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaa |
411 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
8294437 |
actctccaaagttgaactccaaccacaatgacttaaaaacccaccaa |
8294483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 33257318 - 33257272
Alignment:
| Q |
365 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaa |
411 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
33257318 |
actctccaaagttgaactccaaccacaatgacttaaaaaaccaccaa |
33257272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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