View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_21 (Length: 290)
Name: NF1115_low_21
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 48 - 239
Target Start/End: Complemental strand, 9436715 - 9436524
Alignment:
| Q |
48 |
caacaaaatccaagaaaccgtcagatttgtgaatttgcatctcagatatgttgcctccttatgttgtctgtatttttcattgaagcatcttagtatggag |
147 |
Q |
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| T |
9436715 |
caacaaaatccaagaagccgtcaaatttgtgaatttgcttctcagatatgttgcctccttatgttgtctgtatttttcattgaagcatcttagtatggag |
9436616 |
T |
|
| Q |
148 |
catcttagcatagttgatagctttcaaggccattgatgaaggggaccaatgtagatataataagaaaacaattaagttaatgttcaaatatt |
239 |
Q |
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| T |
9436615 |
catcttagcatagttgatagctttcaaggccattgatgaaggggaccaatgtagatataataagaaaacaattaagttaatgttcaaatatt |
9436524 |
T |
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