View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_23 (Length: 283)
Name: NF1115_low_23
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 47 - 272
Target Start/End: Complemental strand, 4409775 - 4409550
Alignment:
| Q |
47 |
gataagcaatgtgattagagtatcattaaatttggtcttaaaagtttaacaatgtaaagaacaaaaccagaactatgctgaaaagggtgaatatcaaaag |
146 |
Q |
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| T |
4409775 |
gataagcaatgtgattagagtatcattaaatttggtcttaaaagtttaacaatgtaaagaacaaaaccagaaatatgctgaaaagggtgaatatcaaaag |
4409676 |
T |
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| Q |
147 |
catgcattggtccaatatgcatgaacattaacaatatttttaattcaagtatcccaaacttcaaaagcacattttttaattttcacagatcccatcaaga |
246 |
Q |
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| T |
4409675 |
catgcattggtccaatatgcatgaacattaacaatatttttaattcaagtatcccaaactccaaaagcacattttttaattttcacagatcccatcaaga |
4409576 |
T |
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| Q |
247 |
tttattgcatagtgcataccattcat |
272 |
Q |
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| T |
4409575 |
tttattgcatagtgcataccattcat |
4409550 |
T |
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