View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_28 (Length: 256)
Name: NF1115_low_28
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 35881749 - 35881988
Alignment:
| Q |
17 |
caaaatagttcttccctccaaaaatctaaccggaacaatttcatggggttatctcaaaaacatctcaaacttacaaattcttgatctctctggaaattct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35881749 |
caaaatagttcttccctccaaaaatctaaccggaacaatttcatggggttatctcaaaaacatctcaaacttacaaattcttgatctctctggaaattct |
35881848 |
T |
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| Q |
117 |
ctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaagaaacaaattcggaggaagcatcaccattgagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35881849 |
ctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaagaaacaaattcggaggaagcatcaccattgagt |
35881948 |
T |
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| Q |
217 |
tgaacaataaaacctcaaccattcaaaaccttaatctctc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35881949 |
tgaacaataaaacctcaaccattcaaaaccttaatctctc |
35881988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 24455950 - 24456189
Alignment:
| Q |
17 |
caaaatagttcttccctccaaaaatctaaccggaacaatttcatggggttatctcaaaaacatctcaaacttacaaattcttgatctctctggaaattct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455950 |
caaaatagttcttccctccaaaaatctaaccggaacaatttcatggggttatctcaaaaacatctcaaacttacaaattcttgatctctctggaaattct |
24456049 |
T |
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| Q |
117 |
ctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaagaaacaaattcggaggaagcatcaccattgagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456050 |
ctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaagaaacaaattcggaggaagcatcaccattgagt |
24456149 |
T |
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| Q |
217 |
tgaacaataaaacctcaaccattcaaaaccttaatctctc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24456150 |
tgaacaataaaacctcaaccattcaaaaccttaatctctc |
24456189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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