View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_3 (Length: 569)
Name: NF1115_low_3
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 89 - 417
Target Start/End: Complemental strand, 2708859 - 2708531
Alignment:
| Q |
89 |
gaccggtgtgctgcttaagttcccctagtaacttgtaacgacgttttacatgtctttcatcaaatagctaactttgttggttactttgcagaaaatcaaa |
188 |
Q |
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| T |
2708859 |
gaccggtgtgctacttaagttcccctagtaacttgtaacgacgttttacatgtctttcatcaaatagctaactttgttggttactttgcagaaaatcaaa |
2708760 |
T |
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| Q |
189 |
tgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaagatatgcctcctatga |
288 |
Q |
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| T |
2708759 |
tgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatctcgccgttcaagatatgcctccgatga |
2708660 |
T |
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| Q |
289 |
ggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaatgttt |
388 |
Q |
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| T |
2708659 |
ggttgggtttgtctggtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaatgtta |
2708560 |
T |
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| Q |
389 |
agcactaatgcaaatgtttgtatattgtt |
417 |
Q |
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| T |
2708559 |
agcactaatgcaaatgtttgtatattgtt |
2708531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 174 - 346
Target Start/End: Complemental strand, 2702835 - 2702663
Alignment:
| Q |
174 |
ttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaag |
273 |
Q |
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| T |
2702835 |
ttgcagaaaatcgactgtgttcacagcaatgctgttatggagataatgcgaggtattcgatatcagttgacggaactcataactggcctcgctgttcaag |
2702736 |
T |
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| Q |
274 |
atatgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggt |
346 |
Q |
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| T |
2702735 |
acatggctccgatgagcttgggtttgtctcatagcctatcaagatacaagttgaagttcagtgcagacaaggt |
2702663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 26713695 - 26713866
Alignment:
| Q |
177 |
cagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaagata |
276 |
Q |
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| T |
26713695 |
cagaaaatcgaatgtgttcacaacaatgctgttatggagttgatgagaggtgtcagatatcaattgaatgaactcatagcaggtctagctgttcaagaca |
26713794 |
T |
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| Q |
277 |
tgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtat |
348 |
Q |
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| T |
26713795 |
tggcccctatgagcttgggtttgtctcatagcttatccagatacaggctgaagtttagcgccgacaaggtat |
26713866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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