View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1115_low_4 (Length: 562)

Name: NF1115_low_4
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1115_low_4
NF1115_low_4
[»] chr5 (17 HSPs)
chr5 (16-529)||(26335205-26335725)
chr5 (315-465)||(26013727-26013877)
chr5 (346-473)||(19903535-19903663)
chr5 (346-473)||(37390246-37390374)
chr5 (270-461)||(27499812-27500003)
chr5 (41-215)||(20690347-20690519)
chr5 (343-465)||(22826146-22826265)
chr5 (41-123)||(37390603-37390685)
chr5 (346-462)||(18325414-18325531)
chr5 (41-85)||(16182687-16182731)
chr5 (41-85)||(24492086-24492130)
chr5 (41-165)||(26014084-26014208)
chr5 (381-465)||(37336637-37336721)
chr5 (42-84)||(18807493-18807535)
chr5 (346-418)||(36740367-36740440)
chr5 (354-406)||(11848646-11848698)
chr5 (41-77)||(25570163-25570199)
[»] chr2 (38 HSPs)
chr2 (257-465)||(42256286-42256494)
chr2 (255-463)||(19877948-19878156)
chr2 (244-465)||(16917286-16917507)
chr2 (21-168)||(16586574-16586721)
chr2 (43-202)||(23959649-23959808)
chr2 (16-85)||(42256593-42256662)
chr2 (42-112)||(27765316-27765386)
chr2 (42-199)||(22268964-22269120)
chr2 (338-465)||(35666038-35666165)
chr2 (39-203)||(19877728-19877893)
chr2 (26-202)||(35665795-35665972)
chr2 (44-127)||(13074085-13074168)
chr2 (246-337)||(27765530-27765621)
chr2 (346-399)||(12060919-12060973)
chr2 (367-487)||(27765606-27765727)
chr2 (41-85)||(22311218-22311262)
chr2 (21-187)||(15375896-15376063)
chr2 (41-168)||(18848670-18848797)
chr2 (25-76)||(26654328-26654379)
chr2 (26-95)||(18038718-18038788)
chr2 (343-419)||(28449450-28449527)
chr2 (44-112)||(33241003-33241072)
chr2 (44-112)||(33248924-33248993)
chr2 (423-464)||(45572305-45572346)
chr2 (423-464)||(45575972-45576013)
chr2 (423-464)||(45579639-45579680)
chr2 (423-464)||(45583306-45583347)
chr2 (423-464)||(45586973-45587014)
chr2 (423-464)||(45590640-45590681)
chr2 (423-464)||(45594307-45594348)
chr2 (423-464)||(45597974-45598015)
chr2 (423-464)||(45601641-45601682)
chr2 (423-464)||(45605308-45605349)
chr2 (423-464)||(45608975-45609016)
chr2 (423-464)||(45612642-45612683)
chr2 (423-464)||(45616309-45616350)
chr2 (41-85)||(21547906-21547950)
chr2 (41-85)||(25916214-25916258)
[»] chr6 (23 HSPs)
chr6 (286-465)||(24575810-24575990)
chr6 (41-205)||(29032277-29032441)
chr6 (16-203)||(26238891-26239077)
chr6 (346-465)||(10814765-10814884)
chr6 (41-168)||(10814415-10814544)
chr6 (42-202)||(17291798-17291959)
chr6 (352-464)||(19691909-19692022)
chr6 (27-156)||(21747375-21747504)
chr6 (29-201)||(17146188-17146360)
chr6 (26-85)||(30701105-30701164)
chr6 (44-142)||(22562386-22562484)
chr6 (41-205)||(4312664-4312829)
chr6 (359-490)||(21747038-21747165)
chr6 (282-465)||(4312381-4312564)
chr6 (41-123)||(19691596-19691679)
chr6 (41-83)||(24576172-24576214)
chr6 (323-452)||(13487765-13487894)
chr6 (353-463)||(4097753-4097863)
chr6 (375-464)||(10821133-10821222)
chr6 (41-149)||(11703763-11703872)
chr6 (28-112)||(14758670-14758755)
chr6 (385-465)||(1558526-1558606)
chr6 (26-85)||(14315234-14315294)
[»] chr4 (30 HSPs)
chr4 (41-463)||(11545216-11545646)
chr4 (20-202)||(11420002-11420185)
chr4 (343-465)||(4746227-4746349)
chr4 (375-465)||(11449400-11449490)
chr4 (41-205)||(11449108-11449273)
chr4 (348-464)||(23866015-23866132)
chr4 (42-150)||(20896789-20896895)
chr4 (347-473)||(12236217-12236344)
chr4 (16-83)||(20245759-20245826)
chr4 (317-465)||(11419715-11419863)
chr4 (358-465)||(12191121-12191228)
chr4 (41-202)||(17473755-17473918)
chr4 (41-174)||(19053519-19053653)
chr4 (42-157)||(47575960-47576075)
chr4 (42-85)||(21809636-21809679)
chr4 (61-162)||(12380492-12380593)
chr4 (346-464)||(13977284-13977404)
chr4 (318-385)||(17474057-17474124)
chr4 (236-275)||(19053412-19053451)
chr4 (27-85)||(19818885-19818944)
chr4 (41-95)||(8677230-8677284)
chr4 (22-110)||(8863878-8863967)
chr4 (354-459)||(19053221-19053326)
chr4 (41-85)||(4745943-4745987)
chr4 (26-85)||(5716877-5716937)
chr4 (22-85)||(8861030-8861094)
chr4 (22-81)||(10220907-10220967)
chr4 (41-77)||(12333745-12333781)
chr4 (409-465)||(15365873-15365929)
chr4 (42-94)||(27941231-27941283)
[»] chr1 (28 HSPs)
chr1 (42-451)||(33438948-33439364)
chr1 (235-438)||(17316266-17316469)
chr1 (26-187)||(17103032-17103193)
chr1 (315-490)||(30805789-30805966)
chr1 (351-465)||(26898060-26898174)
chr1 (42-187)||(14580346-14580491)
chr1 (26-215)||(31584013-31584202)
chr1 (351-463)||(21721122-21721234)
chr1 (10-85)||(34188194-34188269)
chr1 (347-473)||(35896071-35896198)
chr1 (365-490)||(17103326-17103452)
chr1 (347-464)||(29076827-29076945)
chr1 (41-80)||(10751554-10751593)
chr1 (330-473)||(19960231-19960373)
chr1 (346-428)||(1616328-1616410)
chr1 (43-85)||(22666689-22666731)
chr1 (41-154)||(12398089-12398202)
chr1 (238-294)||(17103214-17103270)
chr1 (22-85)||(19365699-19365762)
chr1 (409-450)||(19362071-19362113)
chr1 (409-450)||(19380711-19380753)
chr1 (431-465)||(43282510-43282544)
chr1 (48-157)||(26898360-26898469)
chr1 (42-74)||(9985241-9985273)
chr1 (41-85)||(15650747-15650791)
chr1 (41-85)||(17496313-17496357)
chr1 (357-464)||(22666269-22666377)
chr1 (41-169)||(41029625-41029753)
[»] chr8 (26 HSPs)
chr8 (297-463)||(26576618-26576784)
chr8 (241-490)||(28890270-28890520)
chr8 (41-157)||(28890615-28890731)
chr8 (323-465)||(24502591-24502733)
chr8 (236-465)||(23584784-23585013)
chr8 (47-205)||(25724323-25724482)
chr8 (20-157)||(7321011-7321148)
chr8 (16-181)||(18527755-18527920)
chr8 (41-114)||(24502382-24502455)
chr8 (41-157)||(24276857-24276973)
chr8 (41-153)||(24308550-24308662)
chr8 (355-447)||(25724654-25724746)
chr8 (343-465)||(23520952-23521074)
chr8 (99-160)||(25727255-25727316)
chr8 (353-465)||(24277175-24277287)
chr8 (16-150)||(12863736-12863870)
chr8 (41-79)||(18789651-18789689)
chr8 (61-157)||(23584602-23584698)
chr8 (409-465)||(25727536-25727592)
chr8 (330-473)||(33925482-33925626)
chr8 (41-112)||(17872014-17872085)
chr8 (353-412)||(34062321-34062380)
chr8 (346-380)||(17872341-17872375)
chr8 (431-464)||(12012432-12012465)
chr8 (22-85)||(6587137-6587201)
chr8 (41-85)||(13303543-13303587)
[»] chr3 (25 HSPs)
chr3 (16-169)||(9796481-9796634)
chr3 (238-465)||(13291560-13291788)
chr3 (42-157)||(14426905-14427020)
chr3 (41-157)||(17637167-17637283)
chr3 (238-441)||(14427095-14427298)
chr3 (42-269)||(38076025-38076259)
chr3 (44-157)||(4514998-4515111)
chr3 (41-142)||(4767355-4767456)
chr3 (346-463)||(42250710-42250828)
chr3 (358-490)||(10928936-10929069)
chr3 (26-151)||(17034124-17034249)
chr3 (344-461)||(17119027-17119144)
chr3 (359-490)||(19306927-19307059)
chr3 (26-157)||(17119349-17119481)
chr3 (43-162)||(13291360-13291478)
chr3 (41-95)||(20311361-20311415)
chr3 (42-79)||(5554650-5554687)
chr3 (41-94)||(14328691-14328744)
chr3 (41-81)||(23953632-23953672)
chr3 (41-112)||(8108800-8108871)
chr3 (22-120)||(12129124-12129223)
chr3 (41-157)||(4244324-4244440)
chr3 (346-418)||(4508179-4508251)
chr3 (41-85)||(9828969-9829013)
chr3 (41-85)||(14332678-14332722)
[»] chr7 (33 HSPs)
chr7 (17-205)||(24865678-24865866)
chr7 (42-157)||(19143893-19144008)
chr7 (42-157)||(20743292-20743407)
chr7 (236-465)||(1783009-1783239)
chr7 (42-491)||(32957573-32958029)
chr7 (330-465)||(12733597-12733732)
chr7 (258-465)||(5265260-5265464)
chr7 (41-157)||(17891053-17891168)
chr7 (41-157)||(27706974-27707090)
chr7 (48-174)||(10646486-10646612)
chr7 (343-465)||(27707299-27707420)
chr7 (340-419)||(26822371-26822450)
chr7 (41-95)||(1775270-1775324)
chr7 (333-399)||(7560979-7561045)
chr7 (366-465)||(17891356-17891454)
chr7 (351-465)||(10646762-10646876)
chr7 (41-79)||(10924664-10924702)
chr7 (41-106)||(5740800-5740865)
chr7 (353-473)||(20095038-20095155)
chr7 (16-80)||(956964-957028)
chr7 (41-85)||(8106049-8106093)
chr7 (41-120)||(26822654-26822734)
chr7 (346-428)||(1767567-1767650)
chr7 (391-473)||(4450959-4451041)
chr7 (43-85)||(7185280-7185322)
chr7 (124-202)||(23022384-23022462)
chr7 (16-85)||(12341696-12341765)
chr7 (41-73)||(7560724-7560756)
chr7 (41-149)||(11608818-11608926)
chr7 (385-465)||(15757769-15757849)
chr7 (42-74)||(19142398-19142430)
chr7 (42-74)||(20741797-20741829)
chr7 (354-406)||(39227733-39227785)
[»] scaffold0329 (1 HSPs)
scaffold0329 (351-473)||(4317-4438)
[»] scaffold0514 (1 HSPs)
scaffold0514 (358-458)||(7241-7342)
[»] scaffold0010 (1 HSPs)
scaffold0010 (346-428)||(137084-137166)
[»] scaffold1190 (1 HSPs)
scaffold1190 (358-458)||(1267-1368)
[»] scaffold0804 (1 HSPs)
scaffold0804 (42-157)||(63-178)
[»] scaffold0650 (1 HSPs)
scaffold0650 (343-465)||(5895-6017)
[»] scaffold0485 (1 HSPs)
scaffold0485 (353-438)||(8899-8984)
[»] scaffold0217 (1 HSPs)
scaffold0217 (41-94)||(6581-6635)
[»] scaffold1551 (1 HSPs)
scaffold1551 (409-465)||(645-701)
[»] scaffold0088 (1 HSPs)
scaffold0088 (395-443)||(42192-42240)
[»] scaffold0053 (2 HSPs)
scaffold0053 (368-464)||(27887-27983)
scaffold0053 (41-85)||(28317-28361)


Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 26335205 - 26335725
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattg 115  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  26335205 attggatttatacaatgcctataaagttttgatgataacaaattattaaagaacaattggatatactaatatatgttcaaatatgaaggaccatagattg 26335304  T
Q  116 aaattcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaatcatgggtcaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26335305 aaattcaacaagatcttaacatgtatatgagcatcagaagcataagagaagctagaagaattggtaggagattttaagaaagttcaatcatgggtcaaca 26335404  T
Q  216 cttcagactagaagaaagga------tcagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctag 309  Q
    |||||||| |||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  26335405 cttcagaccagaagaaaggaagttactcagaagctgaagatctgcaccagactctgaagaccatcatactctgaaggacataagactttgagggacctag 26335504  T
Q  310 aagcaac-gtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacc 408  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26335505 aagcaacagtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacc 26335604  T
Q  409 tcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgtattttcaagccattatccatatcagagaaggatatgggagaga 508  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26335605 tcaaggacaaaagaaatgaacggataattccagttgcagcaaaggaatttcaaatgtcttttcaagacattatccatatcagagaaggatatgggagaga 26335704  T
Q  509 aaagagaatcgggaatattcg 529  Q
    |||||||||||||||||||||    
T  26335705 aaagagaatcgggaatattcg 26335725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 315 - 465
Target Start/End: Complemental strand, 26013877 - 26013727
Alignment:
Q  315 acgtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaagg 414  Q
    |||||||||||||  ||||||| || | ||||||||| | ||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||| ||||||    
T  26013877 acgtcagatttgtcatcttctgtagttgtctctatcaaaatctgatagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaagg 26013778  T
Q  415 acaaaaga-aatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    | |||||| ||  |||||||||||||  || | |||||||||||||||||||    
T  26013777 a-aaaagagaacaaacggataattcctgtttctgcaaaggaatttcaaatgt 26013727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 473
Target Start/End: Complemental strand, 19903663 - 19903535
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattg 444  Q
    ||||||||||||||| | |||||||||  ||||||||||| |||| || | ||| ||||||| | ||||||||| | |||| |||  |||||| ||||||    
T  19903663 ctatcagactctgatcgcacaatttgttatcttctgaccacgtgctgaaataaacaaagaactttaaggacaaaggcaatgaaacatataatttcaattg 19903564  T
Q  445 cagcaaaggaatttcaaatgtattttcaa 473  Q
     ||||||||||||||||||| | ||||||    
T  19903563 aagcaaaggaatttcaaatgaactttcaa 19903535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 473
Target Start/End: Complemental strand, 37390374 - 37390246
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattg 444  Q
    |||||||||| |||||||||| ||| || |||||||||||  |||||| ||||| ||||||| ||||||| ||  | |||| ||| |||||||||  ||     
T  37390374 ctatcagactttgatagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattccttttc 37390275  T
Q  445 cagcaaaggaatttcaaatgtattttcaa 473  Q
     |||||||||||||||||||| |||||||    
T  37390274 aagcaaaggaatttcaaatgtcttttcaa 37390246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 461
Target Start/End: Complemental strand, 27500003 - 27499812
Alignment:
Q  270 ccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatt 369  Q
    |||||| ||||||||  ||| |||||||||| | || ||||||| |||||||||||||  |||| |  || | ||||||||| | || ||||||||||||    
T  27500003 ccatcagactttgaaaaacagaagattttgatggacttagaagctacgtcagatttgtcatcttttatagttgtctctatcaaattcagatagtacaatt 27499904  T
Q  370 tgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaa 461  Q
    |||| |||| |||||| ||| ||| ||| | ||| ||| |||| || |||   ||||||||||||||| || ||| || ||| |||||||||    
T  27499903 tgtcatcttttgaccacgtgtagaaacagacaaataacttcaaagataaagagaatgaacggataatttcagttggagtaaatgaatttcaa 27499812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 20690519 - 20690347
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||  || || || |||| |  || ||||||| ||||| | | || ||| ||||| ||    
T  20690519 gttttgatgagaacaaaatattaaaaaacaattggatatgctaatacatatttaagtatgcaatactatagattaaaatttatc-agttctgaacatata 20690421  T
Q  141 tatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaatcatgggtcaaca 215  Q
    || |||||| |||||||||| |||||||| |||| ||  ||  |||||| ||||||||||||||||  |||||||    
T  20690420 taagagcattagaagcataagagaagcta-aagactttataaaagatttgaagaaaggtcaatcataagtcaaca 20690347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 465
Target Start/End: Complemental strand, 22826265 - 22826146
Alignment:
Q  343 tctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaat 442  Q
    ||||||||| | |||||||||||| ||| || ||||||||||| ||| ||| ||||| ||| ||  |||||||||||   |||||||||||||||||       
T  22826265 tctctatcaaagtctgatagtacagtttatcttcttctgaccacgtgtagaaacaaacaaaaaaattcaaggacaaatagaatgaacggataattcc--- 22826169  T
Q  443 tgcagcaaaggaatttcaaatgt 465  Q
    | | |||||||||||||||||||    
T  22826168 ttctgcaaaggaatttcaaatgt 22826146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 37390685 - 37390603
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaa 123  Q
    ||||||||||| | ||  ||||| ||||||||||| |||||||||  |||||||||| |||| ||||||||| | ||||||||    
T  37390685 gttttgatgatgataaggtattacagaacaattggttatgctaatgcatgttcaaatgtgaatgaccatagactaaaattcaa 37390603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 462
Target Start/End: Original strand, 18325414 - 18325531
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattg 444  Q
    ||||||||||||||| ||||||||| || || |||| ||||||| ||| ||||| ||||||| ||| ||||||  | |||| |||  ||||||||  |||    
T  18325414 ctatcagactctgatggtacaatttatcttcgtctggccatgtgaagaaacaaacaaagaacttcagggacaattggaatgaaacacataattccttttg 18325513  T
Q  445 cagcaaaggaatttcaaa 462  Q
     |||||||||||| ||||    
T  18325514 aagcaaaggaattccaaa 18325531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 16182731 - 16182687
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||    
T  16182731 gttttgatgataacaaagtattaaagaataattggatgtgctaat 16182687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 24492086 - 24492130
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||    
T  24492086 gttttgatgataacaaagtattgaagaacaattggatatactaat 24492130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 26014208 - 26014084
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||| ||||||||| ||||||||||||||| |||||| ||||  ||||||||      | ||||||||||| ||||  |||||| | | ||||||||    
T  26014208 gttttgacgataacaaaatattaaagaacaattagatatgttaatatatgttcaagagcacaagaccatagatttaaatataacaaggtatgaacatgta 26014109  T
Q  141 tatgagcatcagaagcataaaagaa 165  Q
    || |||||||| | |||||| ||||    
T  26014108 taagagcatcatatgcataagagaa 26014084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 37336721 - 37336637
Alignment:
Q  381 gaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||| ||| ||| ||||| ||||||| |||||||||||   ||||||||||||||||   || | |||||||||||||||||||    
T  37336721 gaccacgtgtagaaacaaacaaagaacttcaaggacaaagagaatgaacggataattcatgtttctgcaaaggaatttcaaatgt 37336637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 18807535 - 18807493
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaa 84  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||    
T  18807535 ttttgatgataacaaaatatcaaaaaacaattggatatgctaa 18807493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 418
Target Start/End: Original strand, 36740367 - 36740440
Alignment:
Q  346 ctatcagactctgatagtacaattt-gtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaa 418  Q
    |||||||| || ||||||||||||| ||||||||||  |||| || ||| ||||||||||||| | ||||||||    
T  36740367 ctatcagattcagatagtacaattttgtcctcttctagccatatgtagaaacaaataaagaactttaaggacaa 36740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 11848646 - 11848698
Alignment:
Q  354 ctctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaa 406  Q
    |||||||||||||||||||| |||| |||||| ||||||| | ||| ||||||    
T  11848646 ctctgatagtacaatttgtcttcttttgaccacgtgcagaaaaaaacaaagaa 11848698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 25570199 - 25570163
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggat 77  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  25570199 gttttgatgataacaaagtattgaagaacaattggat 25570163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 257 - 465
Target Start/End: Complemental strand, 42256494 - 42256286
Alignment:
Q  257 cagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctatctctatcagactc 356  Q
    ||||||||||||| ||| | ||| |||| |||| ||| || ||||||||| | |||| |||| |||||||| || |||||||||| ||| ||||||||||    
T  42256494 cagactctgaagaacattagactctgaaagacagaagtttctgaggaacccataagccacgttagatttgtctttttctgaagctgtctttatcagactc 42256395  T
Q  357 tgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaat 456  Q
    |||||||||| |||||| |||| | |||| ||||||||||||| ||||||| ||||| ||||||| ||||||||| |||||| |||||||| ||||||||    
T  42256394 tgatagtacattttgtcttcttgtaaccacgtgcagatacaaacaaagaacttcaagtacaaaaggaatgaacgggtaattctaattgcagtaaaggaat 42256295  T
Q  457 ttcaaatgt 465  Q
    |||||||||    
T  42256294 ttcaaatgt 42256286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 255 - 463
Target Start/End: Original strand, 19877948 - 19878156
Alignment:
Q  255 accagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctatctctatcagac 354  Q
    |||||||||| |||||||||| ||| | ||| ||| |||| | |||||  || | |||| ||||||||||||| ||||| || || ||||||||||| ||    
T  19877948 accagactctaaagaccatcagactctaaagaacagaagactctgaggggcccaaaagccacgtcagatttgtcttcttttgtagttatctctatcaaac 19878047  T
Q  355 tctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaagga 454  Q
     |||||||||| ||||||| ||||||||||||||| ||| ||| | ||| ||  |||||||||||   |||||| ||||||||| | ||| | |||||||    
T  19878048 cctgatagtaccatttgtcatcttctgaccatgtggagaaacagacaaaaaaattcaaggacaaagataatgaatggataattctagttgaaacaaagga 19878147  T
Q  455 atttcaaat 463  Q
    |||||||||    
T  19878148 atttcaaat 19878156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 465
Target Start/End: Original strand, 16917286 - 16917507
Alignment:
Q  244 tgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctat 343  Q
    |||||||||||| ||||||||||||||| | | ||| ||||| ||||||||   ||||| | | |||||| || |||||||| | ||||| || || | |    
T  16917286 tgaagatctgcatcagactctgaagacctt-agactctgaagaacataagagcctgagggatccagaagccacatcagatttttcttcttatgtagttgt 16917384  T
Q  344 ctctatca-gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaat 442  Q
    | |||||| ||||||||||||||||||| || |||| |||||| ||| ||||||||| || |||  |||||||||||   ||||| |||||| || || |    
T  16917385 cgctatcaagactctgatagtacaatttttcttcttttgaccacgtgtagatacaaacaaggaatttcaaggacaaagagaatgatcggatactttcagt 16917484  T
Q  443 tgcagcaaaggaatttcaaatgt 465  Q
    | |||||||||||||||||||||    
T  16917485 ttcagcaaaggaatttcaaatgt 16917507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 16586574 - 16586721
Alignment:
Q  21 atttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaatt 120  Q
    ||||||||||| ||| | |  |||||||||||||||| ||||||| || ||||| ||||||||||  |||||||||| || ||||||||| ||| |||||    
T  16586574 atttatacaattcctctaagattttgatgataacaaagtattaaaaaagaattgaatatgctaatatatgttcaaatttgcaggaccataaattaaaatt 16586673  T
Q  121 caacaagatcttaacatgtatatgagcatcagaagcataaaagaagct 168  Q
     |||||| | | || ||||||| |||||||||||||| || |||||||    
T  16586674 taacaaggtttgaaaatgtataagagcatcagaagcacaagagaagct 16586721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 23959808 - 23959649
Alignment:
Q  43 tttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtata 142  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||  |||||||| | || ||||||||| ||| ||||| |||||| | | ||||||||||    
T  23959808 tttgatgataacaaagtattaaataacaacttgatatgctaatatatgttcaagtgtggaggaccatatattaaaatttaacaaggtatgaacatgtata 23959709  T
Q  143 tgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaa 202  Q
     |||| || ||||||  | ||||||| ||||| ||||||| |||| | ||||||||||||    
T  23959708 agagcgtctgaagcactagagaagctggaagacttggtagaagatctgaagaaaggtcaa 23959649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 42256662 - 42256593
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||| |||| | ||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  42256662 attgaatttgtacagtacctataaagttttgatgataacaaagtattaaagaacaattggatatgctaat 42256593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 27765316 - 27765386
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccataga 112  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||  |||||||||| || |||||||||||    
T  27765316 ttttgatgataacaaagtattaaagaataattggatatgttaatatatgttcaaatgtgcaggaccataga 27765386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 22269120 - 22268964
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||| || | ||||| || |||||||||||||  || || ||| ||| ||||||||||||| ||||| | |||| ||| || || |||    
T  22269120 ttttgatgataacaaagtaatgaagaaaaaatggatatgctaatatatatttaaa-atgcaggaccatagattaaaatttatcaaggtctgaaaatatat 22269022  T
Q  142 atgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggt 199  Q
      |||||||||||| |||| |||||||| |||| | ||||| |||| | |||||||||    
T  22269021 tagagcatcagaagtataagagaagctaaaagactaggtagaagatctgaagaaaggt 22268964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 35666038 - 35666165
Alignment:
Q  338 agctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaaga-aatgaacggataat 436  Q
    |||| ||| ||||| ||||||||||||||||||||| ||||| |||||  || ||| | | | ||||||| ||||||| |||||| ||  ||||||||||    
T  35666038 agctgtctatatcaaactctgatagtacaatttgtcatcttccgaccacatgtagaaatagacaaagaacttcaagga-aaaagagaactaacggataat 35666136  T
Q  437 tccaattgcagcaaaggaatttcaaatgt 465  Q
    |||  ||||| ||||||||||||||||||    
T  35666137 tcctgttgcaacaaaggaatttcaaatgt 35666165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 19877728 - 19877893
Alignment:
Q  39 acgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatg 138  Q
    ||||||||||||||||||| ||||||||||||| | ||||  |||||  | ||| || |||  |||||||| || | ||||| |||||| | | ||||||    
T  19877728 acgttttgatgataacaaagtattaaagaacaacttgataaactaatatacgttaaattattcaggaccatcgaataaaatttaacaaggtatgaacatg 19877827  T
Q  139 tatatgagc-atcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaat 203  Q
    |||| | || ||| |||||| || ||||| ||||||| ||||||  |||| | |||||||||||||    
T  19877828 tataagtgcaatctgaagcacaagagaagttagaagacttggtaaaagatatgaagaaaggtcaat 19877893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 35665795 - 35665972
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaaca 125  Q
    |||||| ||| ||| |||||||||||||| || ||||||| |||||||| ||||| ||||  ||||| || |||| | || |||||||| |||||  |||    
T  35665795 tacaattcctttgaagttttgatgataacgaaatattaaaaaacaattgaatatgttaatatatgtttaagtatgcacgatcatagattaaaatttgaca 35665894  T
Q  126 agatcttaacatgtatatgagc-atcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaa 202  Q
    || ||| |||||||||| || | || ||||| |||| | || ||| |||| ||||||| |||| | |||||| |||||    
T  35665895 aggtctaaacatgtataagaacaattagaagtataagaaaaactaaaagacttggtagaagatctgaagaaaagtcaa 35665972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 13074168 - 13074085
Alignment:
Q  44 ttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaag 127  Q
    |||||||||||||| ||||||| |||||||| ||||||||||  ||||| |||| || |  |||||||||| ||||| ||||||    
T  13074168 ttgatgataacaaagtattaaaaaacaattgaatatgctaatatatgtttaaatgtgcataaccatagattaaaatttaacaag 13074085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 27765530 - 27765621
Alignment:
Q  246 aagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctga 337  Q
    ||||||| || |||||||||||| |||||| ||| ||||| ||||||||| || ||| ||| |||  | ||||||||||||| |||||||||    
T  27765530 aagatcttcatcagactctgaagtccatcaaactctgaagtacataagatcttaagggacccagacaccacgtcagatttgtcttcttctga 27765621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 12060973 - 12060919
Alignment:
Q  346 ctatcagactctga-tagtacaatttgtcctcttctgaccatgtgcagatacaaa 399  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  12060973 ctatcaaactctgaatagtacaatttgtcgtcttctgaacatgtgcagatacaaa 12060919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 487
Target Start/End: Original strand, 27765606 - 27765727
Alignment:
Q  367 atttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgta 466  Q
    ||||||| ||||||||||| ||| ||| ||||| ||||||| ||||||||| |   |||||||||||||||||   | || |||||||||||  ||||||    
T  27765606 atttgtcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacagagagaatgaacggataattccggcttcaacaaaggaattttgaatgta 27765705  T
Q  467 ttttcaa-gccattatccatat 487  Q
    |  |||| | ||||||||||||    
T  27765706 taatcaacgtcattatccatat 27765727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 22311218 - 22311262
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||    
T  22311218 gttttgatgataacaaagtattgaagaacaattggatatactaat 22311262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 15376063 - 15375896
Alignment:
Q  21 atttatacaatgcctatgacgttttgatgataacaaattatt-aaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaat 119  Q
    |||| ||||||| || ||| ||||||||||||| ||| |||| ||||||||||||||||| ||| |  ||||| || | |  ||||| || |||| ||||    
T  15376063 atttgtacaatgactctgaagttttgatgataataaagtattaaaagaacaattggatatactagtatatgtttaagtgtataggactattgattaaaat 15375964  T
Q  120 tcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagat 187  Q
    | | |||| ||| ||||| |||| ||| |||||||||| || | ||| ||||||| || |||| ||||    
T  15375963 ttatcaaggtctgaacatatataagagtatcagaagcacaagataagttagaagacttagtagaagat 15375896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 18848797 - 18848670
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||| ||||||||||| |||| ||||||||||||||||| ||||  |||||||| | |  || |||||| ||| ||||| |||||| | | ||||| ||    
T  18848797 gtttttatgataacaaagtattgaagaacaattggatatgataatatatgttcaagtgtacagaaccatatattaaaatttaacaagttttaaacatcta 18848698  T
Q  141 tatgagcatcagaagcataaaagaagct 168  Q
    ||  | ||||| ||||| || |||||||    
T  18848697 taacaacatcaaaagcacaagagaagct 18848670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 26654328 - 26654379
Alignment:
Q  25 atacaatgcctatgacgttttgatgataacaaattattaaagaacaattgga 76  Q
    ||||||| ||| ||| ||||||||||||||||| |||| |||||||||||||    
T  26654328 atacaattcctctgaggttttgatgataacaaagtattgaagaacaattgga 26654379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 18038788 - 18038718
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaa 95  Q
    |||||||||| | | ||||| ||||||||||  ||||||| ||||||||||||||||||||  ||||||||    
T  18038788 tacaatgcctcttaggttttaatgataacaaggtattaaaagaacaattggatatgctaatgtatgttcaa 18038718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 28449450 - 28449527
Alignment:
Q  343 tctctatca-gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaa 419  Q
    ||||||||| |||| |||||||||||| |||| ||||||||||| ||| ||| || || ||||||| | |||||||||    
T  28449450 tctctatcaagactttgatagtacaatgtgtcttcttctgaccacgtgtagaaaccaacaaagaacttaaaggacaaa 28449527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 33241072 - 33241003
Alignment:
Q  44 ttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaaatatgaaggaccataga 112  Q
    |||||||||||||| ||||||| || |||||||||||||||||   ||||||||| || | |||||||||    
T  33241072 ttgatgataacaaagtattaaaagatcaattggatatgctaatatttgttcaaatgtgcaagaccataga 33241003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 33248993 - 33248924
Alignment:
Q  44 ttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaaatatgaaggaccataga 112  Q
    |||||||||||||| ||||||| || |||||||||||||||||   ||||||||| || | |||||||||    
T  33248993 ttgatgataacaaagtattaaaagatcaattggatatgctaatatttgttcaaatgtgcaagaccataga 33248924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45572305 - 45572346
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45572305 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45575972 - 45576013
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45575972 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45576013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45579639 - 45579680
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45579639 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45579680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45583306 - 45583347
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45583306 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45583347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45586973 - 45587014
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45586973 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45587014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45590640 - 45590681
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45590640 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45590681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45594307 - 45594348
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45594307 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45594348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45597974 - 45598015
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45597974 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45598015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45601641 - 45601682
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45601641 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45601682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45605308 - 45605349
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45605308 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45605349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45608975 - 45609016
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45608975 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45609016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45612642 - 45612683
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45612642 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45612683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 45616309 - 45616350
Alignment:
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  45616309 aatgaacggacaattccagtttcagcaaaggaatttcaaatg 45616350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 21547906 - 21547950
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    |||||||||||| |||| |||| |||||||||||||||| |||||    
T  21547906 gttttgatgataccaaagtattgaagaacaattggatatactaat 21547950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 25916214 - 25916258
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    |||||||| |||||||| |||| |||||||||||||||| |||||    
T  25916214 gttttgatcataacaaagtattgaagaacaattggatatactaat 25916258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 286 - 465
Target Start/End: Complemental strand, 24575990 - 24575810
Alignment:
Q  286 gacataagattttgaggaacctagaagcaacgtcaga-tttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgacc 384  Q
    |||| |||| ||||||| |||||||||| |||||| | ||||| ||||||||||| | ||||||||| |||  |||||||||| ||||| |||||||| |    
T  24575990 gacagaagactttgagggacctagaagccacgtcaaactttgttttcttctgaagttgtctctatcatacttagatagtacaacttgtcttcttctgatc 24575891  T
Q  385 atgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    |  |||| ||| ||||||||||| ||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  24575890 acatgcatatataaataaagaacttcaaggacaaaaggaatgaacagataattccagttgcatcaaaggaatttcaaatgt 24575810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 29032441 - 29032277
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||  || ||| |   || |||| | |||||| ||||| ||||||  || ||||||||    
T  29032441 gttttgatgataacaaagtattaaagaacaattgaatatgctaatatatattctagagtgcaggatcttagattaaaattgaacaaggcctgaacatgta 29032342  T
Q  141 tatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaatca 205  Q
    || |||||||||||||| ||  ||||||| || | ||||||| | |||| |||||||| ||||||    
T  29032341 taagagcatcagaagcacaagtgaagctaaaaaacttggtagaaaatttgaagaaaggccaatca 29032277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 26239077 - 26238891
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattg 115  Q
    |||||||||  ||||||||  ||  ||||||||||||||||| |||| ||||||||||||||||||||||  || || ||  ||| | ||||||| |||     
T  26239077 attgaatttgcacaatgccactgcagttttgatgataacaaagtattgaagaacaattggatatgctaatatatttttaagcatgcatgaccataaatta 26238978  T
Q  116 aaattcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaat 203  Q
    ||||| |  ||| ||| ||||| ||||  ||||||||||||| ||||||||||| || ||||  ||  ||||||||||||||||||||    
T  26238977 aaatttattaaggtctaaacatatataaaagcatcagaagcacaaaagaagcta-aaaaatttataaaagattttaagaaaggtcaat 26238891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 346 - 465
Target Start/End: Original strand, 10814765 - 10814884
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgc 445  Q
    |||||| | |||||||||| ||||||||   ||||||||| ||| ||| ||||| ||||||| | |||||||||   ||||||||||||||| || || |    
T  10814765 ctatcaaagtctgatagtataatttgtctcattctgaccacgtgtagaaacaaacaaagaacttaaaggacaaagagaatgaacggataatttcagtttc 10814864  T
Q  446 agcaaaggaatttcaaatgt 465  Q
     |||||||||||||||||||    
T  10814865 tgcaaaggaatttcaaatgt 10814884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 10814415 - 10814544
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggacc--atagattgaaattcaacaagatcttaacatg 138  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||  | ||| || | || ||||||  ||||||| ||||| |||||| ||| ||||||    
T  10814415 gttttgatggtaacaaagaattaaagaacaattggatatgctaatatacgtttaagtgtgtaggaccatatagattaaaatttaacaaggtctgaacatg 10814514  T
Q  139 tatatgagcatcagaagcataaaagaagct 168  Q
    |||| |||||||| ||| | || |||||||    
T  10814515 tataagagcatcaaaagtaaaagagaagct 10814544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 17291959 - 17291798
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||| | |||||||| ||||| ||||||||||  ||||| || | || | || |||||||| ||||| |||||  ||| ||||| |||    
T  17291959 ttttgatgataacaaaatcttaaagaataattgaatatgctaatatatgtttaagtgtgtaagatcatagattaaaatttaacaaagtctgaacatatat 17291860  T
Q  142 atgagcatcagaagcataaaagaagct-agaagaattggtaggagattttaagaaaggtcaa 202  Q
       |||| || |||||||| ||||||| | |||| ||||||| |||||| ||||||||||||    
T  17291859 gatagcaacaaaagcataagagaagctaaaaagacttggtagaagatttgaagaaaggtcaa 17291798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 464
Target Start/End: Original strand, 19691909 - 19692022
Alignment:
Q  352 gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattgcagcaa 450  Q
    ||||||||||||  |||||||||||||||||| ||||| ||| ||||| ||||| | ||||||||||  |||||| |||| ||||||  | ||| |||||    
T  19691909 gactctgatagtttaatttgtcctcttctgactatgtgtagaaacaaacaaagagcttcaaggacaattgaaatgaaacgaataatttaatttgaagcaa 19692008  T
Q  451 aggaatttcaaatg 464  Q
    ||||||||| ||||    
T  19692009 aggaatttcgaatg 19692022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 21747504 - 21747375
Alignment:
Q  27 acaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaa 126  Q
    ||||||||| | | || ||||| |||||||| |||||||||| ||||||||||||||||  ||| ||||  ||| ||||||||| | | ||||| |||||    
T  21747504 acaatgcctctaaagtgttgataataacaaagtattaaagaaaaattggatatgctaatatatgatcaaggatgcaggaccatatactaaaatttaacaa 21747405  T
Q  127 gatcttaacatgtatatgagcatcagaagc 156  Q
    | ||| || ||||| | |||||||||||||    
T  21747404 ggtctgaaaatgtaaaagagcatcagaagc 21747375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 17146188 - 17146360
Alignment:
Q  29 aatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaaga 128  Q
    |||||||||||  |||| ||||||||||| || ||||||||||||| ||||||||||  || || || | || |||| |||| ||| ||||| ||||||     
T  17146188 aatgcctatgatttttttatgataacaaagtactaaagaacaattgtatatgctaatatatatttaagtgtgcaggatcatatattaaaatttaacaagg 17146287  T
Q  129 tcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtca 201  Q
    | | |||||  ||| ||| |||||||||| || |||||||| || | | ||||| |||| | |||||||||||    
T  17146288 tttgaacatagataagagtatcagaagcacaagagaagctaaaatactcggtagaagatatgaagaaaggtca 17146360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 30701105 - 30701164
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||| || ||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  30701105 tacaatgtctctgaagttttgatgataacaaagtataaaagaacaattggatatgctaat 30701164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 22562386 - 22562484
Alignment:
Q  44 ttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtata 142  Q
    ||||| |||||||| |||||||||| |||||||||||| |||  |||||||| | || ||||| ||||||| ||||| || ||| ||| ||||||||||    
T  22562386 ttgattataacaaagtattaaagaaaaattggatatgcgaatatatgttcaagtgtgcaggactatagattaaaatttaaaaaggtctgaacatgtata 22562484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 4312829 - 4312664
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    |||||||||| ||||||  |||||| ||||||||||||| |||||  |||||||| | || | ||||||| ||| ||||| |||||| | | ||||||||    
T  4312829 gttttgatgacaacaaaacattaaataacaattggatattctaatacatgttcaagtgtgcatgaccatatattaaaatttaacaagttttgaacatgta 4312730  T
Q  141 tatgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaatca 205  Q
    || |||||| | ||  | | ||||||||  |||| | |||||| |||| | |||||||||||||||    
T  4312729 taagagcataaaaaatacacaagaagctgaaagactatggtagaagatctgaagaaaggtcaatca 4312664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 490
Target Start/End: Complemental strand, 21747165 - 21747038
Alignment:
Q  359 atagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaattt 458  Q
    ||||| |||||| || ||||||||||| ||||||||||||| ||||||| |||| |||     ||||||  | ||||||||| ||||| |||| ||||||    
T  21747165 atagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaacttcaaagac-----aaatgacagtataattccagttgcaacaaacgaattt 21747071  T
Q  459 caaatgtattttcaa-gccattatccatatcag 490  Q
    ||||||| | || || | |||||||||||||||    
T  21747070 caaatgtctattgaacgacattatccatatcag 21747038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 465
Target Start/End: Complemental strand, 4312564 - 4312381
Alignment:
Q  282 gaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctg 381  Q
    |||| ||||||||| |||||| ||| |||  | |||||||||||||  |||| || || | ||||||||| | |||||||||| | ||| || ||||||     
T  4312564 gaagtacataagatcttgagggacccagactccacgtcagatttgtcctcttatgtagttgtctctatcaaagtctgatagtagagtttatcttcttcta 4312465  T
Q  382 accatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||  || ||| ||||| ||| ||| |||||| ||||  |||||| | |||||||||| ||   ||||| |||||||||||||    
T  4312464 accacatgtagaaacaaacaaataacttcaagggcaaataaaatgaccagataattccagtttttgcaaaagaatttcaaatgt 4312381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 19691596 - 19691679
Alignment:
Q  41 gttttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaa 123  Q
    ||||||||||| ||||| ||| ||| | ||||||||||||||||||  |||||||||| || |||| |||||||| ||||||||    
T  19691596 gttttgatgattacaaaatataaaaagtacaattggatatgctaatgtatgttcaaatctggaggatcatagattaaaattcaa 19691679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 24576214 - 24576172
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgcta 83  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  24576214 gttttgatgataacaaagtattcaagaacaattggatatgcta 24576172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 452
Target Start/End: Original strand, 13487765 - 13487894
Alignment:
Q  323 tttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaaga 422  Q
    |||||| |||||||||| | ||||||| |||  |  ||||||||| ||||| | || |||| | ||||| ||||||||||| ||| ||||||||||||      
T  13487765 tttgtgctcttctgaagttgtctctattagagacaaatagtacaacttgtctttttttgactacgtgcaaatacaaataaaaaacttcaaggacaaaaag 13487864  T
Q  423 aatgaacggataattccaattgcagcaaag 452  Q
    ||| |||  |||||| || |||||||||||    
T  13487865 aattaacaaataatttcagttgcagcaaag 13487894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 463
Target Start/End: Original strand, 4097753 - 4097863
Alignment:
Q  353 actctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaag 452  Q
    ||||| |||||||| |||||  || ||||||||  || ||| | ||| ||||||| |||||||||||   ||||||| ||||||||||  | || |||||    
T  4097753 actctaatagtacagtttgtgttcatctgaccacatgtagaaataaacaaagaacttcaaggacaaagagaatgaaccgataattccatattcaacaaag 4097852  T
Q  453 gaatttcaaat 463  Q
    |||||||||||    
T  4097853 gaatttcaaat 4097863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 464
Target Start/End: Complemental strand, 10821222 - 10821133
Alignment:
Q  375 tcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    ||||||||||| ||| ||| ||  | |||| || | |||||||||  ||||||||| ||||||||| || ||||||| ||||||||||||    
T  10821222 tcttctgaccacgtgtagaaacggaaaaaggactttaaggacaaagaaaatgaacgaataattccagtttcagcaaaagaatttcaaatg 10821133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 11703763 - 11703872
Alignment:
Q  41 gttttgatgataac-aaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgt 139  Q
    |||||||||||||| ||| ||||| |||||||||| | ||||||||  ||||| || | || | || |||||||| ||||| ||||| || | |||||||    
T  11703763 gttttgatgataacaaaagtattatagaacaattgtaaatgctaatatatgtttaagtgtgcatgatcatagattaaaatttaacaatatttgaacatgt 11703862  T
Q  140 atatgagcat 149  Q
    ||| ||||||    
T  11703863 ataagagcat 11703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 14758755 - 14758670
Alignment:
Q  28 caatgcctatgacgttttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaaatatgaaggaccataga 112  Q
    |||||||| | | ||||||||||||||||  ||||||| |  |||||||||||||||||   ||||||| | ||||||||||||||    
T  14758755 caatgcctcttaagttttgatgataacaaggtattaaaagttcaattggatatgctaatatttgttcaagtgtgaaggaccataga 14758670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 1558606 - 1558526
Alignment:
Q  385 atgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||||||||||||| ||||||  | |||||| |||  ||||||| || ||||||| |||||| ||| ||| |||||||||    
T  1558606 atgtgcagatacaaacaaagaaatttaaggactaaaagaatgaacagacaattccagttgcagtaaatgaacttcaaatgt 1558526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 14315234 - 14315294
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattatt-aaagaacaattggatatgctaat 85  Q
    ||||||| || ||| ||||||||||||||||| |||| ||| |||||||| ||||||||||    
T  14315234 tacaatgtctttgaagttttgatgataacaaactattgaaaaaacaattgaatatgctaat 14315294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 41 - 463
Target Start/End: Complemental strand, 11545646 - 11545216
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||| | |||| || |||||||||| ||| ||||  |||||||| | || ||||||||| ||| ||||| || ||| ||| ||||||||    
T  11545646 gttttgatgataacacaatattgaaaaacaattggacatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaataaggtctgaacatgta 11545547  T
Q  141 tatgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaatcatgggtcaacacttcagactagaagaaagga---- 235  Q
     | |||||||| ||| |||| ||||||||  ||| | |||||| |||| | ||||||||| |||||   |||||||| |  ||  ||||||||| |        
T  11545546 aaagagcatcaaaagtataagagaagctaatagactatggtagaagatctcaagaaaggttaatcagaagtcaacaccttggatcagaagaaagaaagtc 11545447  T
Q  236 --tcagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttctt 333  Q
      |||||| |||||||||| || |||||||| |||||||||| ||| ||||| | | ||||    |||| ||| ||||   || |||||||| |  ||||    
T  11545446 aatcagaacctgaagatctacatcagactctaaagaccatcagactctgaagaatagaagacccagagggacccagaattcacatcagatttatcctctt 11545347  T
Q  334 ctgaagctatctctatca-gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacgga 432  Q
     ||  | | ||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| ||||| ||| ||| |||||||||||   ||| ||||||    
T  11545346 atgttgttgtctctatcaagactctgataatacaatttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagagaataaacgga 11545247  T
Q  433 taattccaattgcagcaaaggaatttcaaat 463  Q
    |||||||| || || ||||||||||||||||    
T  11545246 taattccagtttcaacaaaggaatttcaaat 11545216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 11420185 - 11420002
Alignment:
Q  20 aatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaat 119  Q
    ||||| |||||| ||| | | ||||||||||||||||| |||||||||||||||||||||| ||||  |||||||| | | |||||||||| ||| ||||    
T  11420185 aatttgtacaattcctctaaggttttgatgataacaaaatattaaagaacaattggatatgataatatatgttcaagtgtaaaggaccatatattaaaat 11420086  T
Q  120 tcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaa 202  Q
    | |||||| ||| |||||||||| || ||||||||| | || |||||||  |||| | |||||| |||| | ||||||||||||    
T  11420085 ttaacaaggtctgaacatgtataagaacatcagaagtagaagagaagctcaaagactatggtagaagatctgaagaaaggtcaa 11420002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 343 - 465
Target Start/End: Original strand, 4746227 - 4746349
Alignment:
Q  343 tctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaat 442  Q
    ||||||| ||| || |||||||||||||||  ||| |||| |||||| | ||||||| ||||||| ||||||||||||| |||||||  ||||||||| |    
T  4746227 tctctattagattcagatagtacaatttgtattctcctgatcatgtgaaaatacaaacaaagaacttcaaggacaaaaggaatgaacaaataattccagt 4746326  T
Q  443 tgcagcaaaggaatttcaaatgt 465  Q
    ||||  ||| |||||||||||||    
T  4746327 tgcaataaaagaatttcaaatgt 4746349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 375 - 465
Target Start/End: Original strand, 11449400 - 11449490
Alignment:
Q  375 tcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||||||||||||| ||| ||||| ||| ||| |||||||||||  ||||||||||||||||||| || || ||||||||||||||||||    
T  11449400 tcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagaaaatgaacggataattccagtttcaacaaaggaatttcaaatgt 11449490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 11449108 - 11449273
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||| | |||| ||||||||||||| ||| ||||  |||||||| | || ||||||||| ||| ||||| || ||| ||| ||||||||    
T  11449108 gttttgatgataacacaatattgaagaacaattggacatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaataaggtctgaacatgta 11449207  T
Q  141 tatgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaatca 205  Q
     | |||||||| |||||||| ||||||||  ||| | |||||| |||| | ||||||||| |||||    
T  11449208 aaagagcatcaaaagcataagagaagctaatagactatggtagaagatctcaagaaaggttaatca 11449273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 464
Target Start/End: Complemental strand, 23866132 - 23866015
Alignment:
Q  348 atcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattgca 446  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||| | ||||| ||||||| ||||||||||  | |||| |||| ||||||||  ||| |    
T  23866132 atcagactcagatagtacagtttgtcctcttctgatcatgtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaa 23866033  T
Q  447 gcaaaggaatttcaaatg 464  Q
    |||||||||||| |||||    
T  23866032 gcaaaggaattttaaatg 23866015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 20896789 - 20896895
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||| ||| |||||||||||||||||||||||||||  |||||  | |||| | ||||||| ||| || || |||||| |||||||||||||    
T  20896789 ttttgatgataataaagtattaaagaacaattggatatgctaatatatgtt--agtatgcatgaccatatattaaattttaacaaggtcttaacatgtat 20896886  T
Q  142 atgagcatc 150  Q
    | |||||||    
T  20896887 aagagcatc 20896895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 347 - 473
Target Start/End: Complemental strand, 12236344 - 12236217
Alignment:
Q  347 tatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattgc 445  Q
    |||||||||  |||| |||| ||||||||||||||| |||||| ||| ||| |  |||||| ||||||||||  |||||| |||||||||||||  |||     
T  12236344 tatcagacttagataatacagtttgtcctcttctgatcatgtgaagaaacatacgaagaacttcaaggacaattgaaatgaaacggataattccttttga 12236245  T
Q  446 agcaaaggaatttcaaatgtattttcaa 473  Q
    |||||| |||||| |||||| |||||||    
T  12236244 agcaaaagaattttaaatgtcttttcaa 12236217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 20245826 - 20245759
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgcta 83  Q
    |||| |||| |||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  20245826 attggatttgtacaatgcctctgatgttttgatgataacaaagtattgaagaacaattggatatgcta 20245759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 465
Target Start/End: Complemental strand, 11419863 - 11419715
Alignment:
Q  317 gtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggac 416  Q
    |||||||||||  ||||||| || | | ||||||| | ||||||| |||| ||| || ||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  11419863 gtcagatttgtcctcttctgtagttgtttctatcaaagtctgataatacagtttttcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggac 11419764  T
Q  417 aaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    |||   |||||||  |||||| ||||| ||  | |||||||||||||||    
T  11419763 aaagagaatgaacatataattacaatttcaatagaggaatttcaaatgt 11419715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 465
Target Start/End: Complemental strand, 12191228 - 12191121
Alignment:
Q  358 gatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatt 457  Q
    ||||||||| |||||| |||| | |||||||||||| ||| | ||||||| |||| |||||  | | ||||| |||||||||  ||| ||||||||||||    
T  12191228 gatagtacactttgtcttcttgtaaccatgtgcagaaacagaaaaagaacttcaaagacaattggattgaacagataattccttttgaagcaaaggaatt 12191129  T
Q  458 tcaaatgt 465  Q
    ||||||||    
T  12191128 tcaaatgt 12191121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 17473755 - 17473918
Alignment:
Q  41 gttttgatgataacaaat-tattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgt 139  Q
    ||||||||||||| |||  |||||||||| ||||  ||||| ||||  |||||||| | || |||| |||| ||| ||||| |||||| ||| |||||||    
T  17473755 gttttgatgataataaaagtattaaagaaaaattaaatatgttaatatatgttcaagtgtgcaggaacataaattaaaatttaacaaggtctgaacatgt 17473854  T
Q  140 atatgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaa 202  Q
    ||| ||| |||||||||| || |||| ||  |||| | |||||| |||||| ||||||||||||    
T  17473855 ataagagtatcagaagcacaagagaaactcaaagactatggtagaagatttgaagaaaggtcaa 17473918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 19053653 - 19053519
Alignment:
Q  41 gttttgatgataacaaat-tattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgt 139  Q
    |||||||||||||||||  |||||| |||||||| |||||||||||  |||||||| | ||  |||||||| ||| ||||| |||||| ||| || || |    
T  19053653 gttttgatgataacaaaagtattaa-gaacaattagatatgctaatatatgttcaagtgtgctggaccataaattaaaatttaacaaggtctgaaaatat 19053555  T
Q  140 atatgagcatcagaagcataaa-agaagctagaaga 174  Q
    ||| |||||||||||||| ||| |||||||| ||||    
T  19053554 ataagagcatcagaagcacaaagagaagctaaaaga 19053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 47576075 - 47575960
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||| |||||||||||| ||| ||||||||||  |||||||| | |  ||||  ||| ||| ||||| |||||  ||| |||||||||    
T  47576075 ttttgatgataacaaagtattaaagaacacttgaatatgctaatatatgttcaagtgtataggattataaattaaaatttaacaaagtctgaacatgtat 47575976  T
Q  142 atgagcatcagaagca 157  Q
    | |||||||| |||||    
T  47575975 aagagcatcaaaagca 47575960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 21809636 - 21809679
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  21809636 ttttgatgataacaaaatattaaaaaacaattggatatgctaat 21809679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 12380593 - 12380492
Alignment:
Q  61 ttaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtatatgagcatcagaagcataa 160  Q
    ||||||||||||||||||| |||||  ||||| || | || | ||||||| ||| ||||| |||||| ||| | |||||||| |||||||||| ||| ||    
T  12380593 ttaaagaacaattggatattctaatatatgtttaagtgtgcatgaccatatattaaaatttaacaagttctgagcatgtataagagcatcagatgcacaa 12380494  T
Q  161 aa 162  Q
    ||    
T  12380493 aa 12380492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 464
Target Start/End: Original strand, 13977284 - 13977404
Alignment:
Q  346 ctatcagactctgat-agtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaa-aagaaatgaacggataattccaatt 443  Q
    ||||||||||||||| |||||| |||| | ||||||||| | ||||||| ||||| ||||||| |||| |||||  |||| | |||  |||||||   ||    
T  13977284 ctatcagactctgataagtacagtttgccttcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattagaattaaacaaataattcttttt 13977383  T
Q  444 gcagcaaaggaatttcaaatg 464  Q
    | |||||||||||||||||||    
T  13977384 gaagcaaaggaatttcaaatg 13977404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 17474057 - 17474124
Alignment:
Q  318 tcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgacca 385  Q
    ||||||||||  ||||||| || | ||||||||| | |||||||||||| ||||||||||||| ||||    
T  17474057 tcagatttgtcatcttctgtagttgtctctatcaaagtctgatagtacagtttgtcctcttctaacca 17474124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 19053451 - 19053412
Alignment:
Q  236 tcagaagctgaagatctgcaccagactctgaagaccatca 275  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  19053451 tcagaagctgaagatctgcatcagactctgaagagcatca 19053412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 19818885 - 19818944
Alignment:
Q  27 acaatgcctatgacgttttgatgataacaaattatt-aaagaacaattggatatgctaat 85  Q
    ||||||||| | | |||||||||||||||| ||||| ||||| |||||||||||||||||    
T  19818885 acaatgcctctaaagttttgatgataacaagttattaaaagatcaattggatatgctaat 19818944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 8677230 - 8677284
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaa 95  Q
    ||||||||||||||||| ||||||| |||||||| ||||| ||||  ||||||||    
T  8677230 gttttgatgataacaaagtattaaaaaacaattgaatatgttaatatatgttcaa 8677284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 8863967 - 8863878
Alignment:
Q  22 tttatacaatgcctatgacgttttgatgataacaa-attattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccata 110  Q
    |||||| |||| || ||| |||||||| ||||||| | ||| |||||||||||||||||||||||   | |||||||||| || ||||||    
T  8863967 tttatagaatgtctctgaagttttgataataacaagagtataaaagaacaattggatatgctaatgtgtattcaaatatgcagaaccata 8863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 19053326 - 19053221
Alignment:
Q  354 ctctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaagg 453  Q
    ||||||| ||| | ||| || ||||||||||| ||||||| ||||| ||||||| |||||||| ||   |||||||   ||||| |||||  ||||||||    
T  19053326 ctctgattgtatagtttatcttcttctgaccacgtgcagaaacaaacaaagaacttcaaggaccaagagaatgaacatgtaatttcaattttagcaaagg 19053227  T
Q  454 aatttc 459  Q
    ||||||    
T  19053226 aatttc 19053221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 4745943 - 4745987
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  4745943 gttttgatgataataaattattgaagaataattggatatgttaat 4745987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 5716937 - 5716877
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattat-taaagaacaattggatatgctaat 85  Q
    |||||||||||| | ||||||||||||||||   ||  |||||||||||||||||||||||    
T  5716937 tacaatgcctataatgttttgatgataacaatgaatgaaaagaacaattggatatgctaat 5716877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 8861094 - 8861030
Alignment:
Q  22 tttatacaatgcctatgacgttttgatgataacaa-attattaaagaacaattggatatgctaat 85  Q
    |||||| |||| || ||| |||||||| ||||||| | ||| |||||||||||||||||||||||    
T  8861094 tttatagaatgtctctgaagttttgataataacaagagtataaaagaacaattggatatgctaat 8861030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 10220907 - 10220967
Alignment:
Q  22 tttatacaatgcctatgacgttttgatgataacaaattat-taaagaacaattggatatgc 81  Q
    |||||||||||||| ||| |||||||| |||||||| |||  |||||||||||| ||||||    
T  10220907 tttatacaatgcctctgaagttttgataataacaaagtataaaaagaacaattgaatatgc 10220967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 12333745 - 12333781
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggat 77  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  12333745 gttttgatgataacaaaatattgaagaacaattggat 12333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 15365873 - 15365929
Alignment:
Q  409 tcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||||||||||  |||||||| ||||| ||| |||||| ||| |||||||||||||    
T  15365873 tcaaggacaaaaagaatgaacgaataatcccagttgcagtaaatgaatttcaaatgt 15365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 27941283 - 27941231
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttca 94  Q
    ||||||||| |||||| ||| |||||||||| ||||||||||||  |||||||    
T  27941283 ttttgatgacaacaaagtatgaaagaacaatcggatatgctaatatatgttca 27941231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 42 - 451
Target Start/End: Complemental strand, 33439364 - 33438948
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||  ||||||||||||||| |||||||||||  ||| |||| | || ||||||||||||| || || || ||||| | |||||||||    
T  33439364 ttttgatgataacaaggtattaaagaacaattagatatgctaatatatgatcaagtgtgcaggaccatagattaaattttaaaaagatatgaacatgtat 33439265  T
Q  142 atgagcatcagaagcataaa-agaagctagaaga-attggtaggagattttaagaaaggtcaatcatgggtcaacacttcagactagaagaaagga---- 235  Q
    | |||||||||||||| ||| ||||| || ||||  ||||||| |||| | | ||||||| || |||  ||||||   |  ||  |||||||||||        
T  33439264 aagagcatcagaagcacaaagagaagttaaaagactttggtagaagatctgatgaaaggtaaaccataagtcaacgtcttggatcagaagaaaggaagca 33439165  T
Q  236 --tcagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttctt 333  Q
      ||| ||||| |||||||||| |||||| ||||||||  |  ||||||||| ||| |||||  || || |||||||||| |||||| |||| |  | ||    
T  33439164 actcataagctaaagatctgcatcagactttgaagacctcc--actttgaagtacagaagatcctgcgggacctagaagccacgtcaaatttatcatttt 33439067  T
Q  334 ctgaagctatctctatc-agactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacgga 432  Q
    ||| || | |||||||| ||||||||||| |||||||| || ||||||||||| ||| | |  |||| ||||||| |||||||||||   ||||| ||||    
T  33439066 ctgtagttgtctctatcaagactctgataatacaatttatcttcttctgaccacgtgtataagcaaacaaagaacttcaaggacaaagataatgagcgga 33438967  T
Q  433 taattccaattgcagcaaa 451  Q
    |||||||| || |||||||    
T  33438966 taattccagtttcagcaaa 33438948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 235 - 438
Target Start/End: Original strand, 17316266 - 17316469
Alignment:
Q  235 atcagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttc 334  Q
    |||||||| ||||||||| || |||||||| | || ||||| ||| ||||| ||| ||||| |||||| ||| |||  | ||||||||||||| |||||     
T  17316266 atcagaagatgaagatcttcatcagactctaaggatcatcagactctgaagtacaaaagatcttgagggacccagacaccacgtcagatttgtcttctta 17316365  T
Q  335 tgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggata 434  Q
    || || | ||||||||| | ||||||||||||||||||| ||||||||||||||| ||| ||||| || |||| | |||||||||  ||||||| | |||    
T  17316366 tgtagttgtctctatcaaagtctgatagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaggaactttaaggacaaagaaaatgaaagaata 17316465  T
Q  435 attc 438  Q
    ||||    
T  17316466 attc 17316469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 17103032 - 17103193
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaaca 125  Q
    |||||| ||| ||| ||||||||||||||||| ||||||||| |||||| |||| |||||  |||||||  |||| ||||||||| ||| ||||| ||||    
T  17103032 tacaattcctctgaagttttgatgataacaaaatattaaagagcaattgaatatcctaatatatgttcacgtatgcaggaccatatattaaaatttaaca 17103131  T
Q  126 agatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagat 187  Q
    || ||| |||||||||| |||||||||||| | || |||||||| |||| ||||||| ||||    
T  17103132 agttctgaacatgtataagagcatcagaagaacaagagaagctaaaagacttggtagaagat 17103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 490
Target Start/End: Original strand, 30805789 - 30805966
Alignment:
Q  315 acgtcagatttgtgttcttctgaagctatctctatcag-actctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaag 413  Q
    |||||||||||||  ||||||  || | |||||||||  ||||||||||||||||||||| ||||||| ||| ||| ||| ||||| ||||||| |||||    
T  30805789 acgtcagatttgtcatcttctatagttgtctctatcaatactctgatagtacaatttgtcttcttctggccacgtgtagaaacaaacaaagaacttcaag 30805888  T
Q  414 gacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgtattttcaa-gccattatccatatcag 490  Q
    || |||   |||||||||||||||| | || ||  ||||||||||| ||||| |  |||| | |||||||||||||||    
T  30805889 gagaaagacaatgaacggataattctagtttcatgaaaggaatttcgaatgtctaatcaacgacattatccatatcag 30805966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 465
Target Start/End: Complemental strand, 26898174 - 26898060
Alignment:
Q  351 agactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaa 450  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||| ||| | |||||||  |||||||||||  ||| |||  ||||||| | || ||| ||    
T  26898174 agactctgatagtacaatttgtcttcttctgaccacgtgtagaaacatacaaagaactgcaaggacaaaaataattaacaaataattctagtttcagtaa 26898075  T
Q  451 aggaatttcaaatgt 465  Q
    || ||||||||||||    
T  26898074 agaaatttcaaatgt 26898060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 14580346 - 14580491
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||  ||||||||   || |||| | |||||| ||||| |||||| ||| || ||||||    
T  14580346 ttttgatgataacaaagtattaaagaacaattagatatgttaatatatgttcaagagtgcaggatcttagattaaaatttaacaaggtctaaatatgtat 14580445  T
Q  142 atgagcatcagaagcataaaagaagctagaagaattggtaggagat 187  Q
    |  |||| |||||||| || ||||| || |||| ||| ||| ||||    
T  14580446 aaaagcaccagaagcacaagagaagttaaaagacttgatagaagat 14580491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 31584013 - 31584202
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaaca 125  Q
    |||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||| ||||   || | || | || ||||||||||||| ||||| | ||    
T  31584013 tacaatgcctctgatgttttgatgataacaaagtattgaagaataattggatatgttaatacgtgcttaagtgtgcaggaccatagattaaaatttatca 31584112  T
Q  126 agatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaatcatgggtcaaca 215  Q
    || ||| | ||| |||  |||||||||||||| || ||||  || |||| || |||| |||| | |||||| ||||| |||  |||||||    
T  31584113 aggtctgagcatatatgagagcatcagaagcacaagagaaattaaaagacttcgtagaagatctgaagaaatgtcaaccataagtcaaca 31584202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 463
Target Start/End: Original strand, 21721122 - 21721234
Alignment:
Q  351 agactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaa 450  Q
    |||||| |||| ||||||||||| |||||||| |||||| | ||||||| ||||||| ||||||||| | |||||||||  |||||| |  || ||| ||    
T  21721122 agactcggatattacaatttgtcttcttctgatcatgtgtaaatacaaacaaagaacttcaaggacatatgaaatgaacaaataattactttttcagtaa 21721221  T
Q  451 aggaatttcaaat 463  Q
     ||||||||||||    
T  21721222 gggaatttcaaat 21721234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 34188269 - 34188194
Alignment:
Q  10 aagaatattgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||| ||| ||||| |||||||||| ||| ||||||||||||||||| |||| || |||||||| ||||||||||    
T  34188269 aagaaaattaaatttgtacaatgcctttgaagttttgatgataacaaagtattgaaaaacaattgaatatgctaat 34188194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 473
Target Start/End: Complemental strand, 35896198 - 35896071
Alignment:
Q  347 tatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattgc 445  Q
    |||||||||| ||||||||| ||| ||||||||| ||||  |||||| ||||||||||||| | ||||| ||  | |||| || ||||||||||  |||     
T  35896198 tatcagactcagatagtacagtttatcctcttctaaccacatgcagaaacaaataaagaactttaaggaaaatcggaatgaaatggataattccttttga 35896099  T
Q  446 agcaaaggaatttcaaatgtattttcaa 473  Q
    |||||| ||||||||||| | |||||||    
T  35896098 agcaaatgaatttcaaatttcttttcaa 35896071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 17103326 - 17103452
Alignment:
Q  365 caatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||| ||||||||| ||||  || ||||||| | ||||||| | ||||| |||   ||||||| |||||||||| ||||||||||| |||||||||||    
T  17103326 caatttttcctcttctaaccacatgtagatacagacaaagaactttaaggataaagagaatgaacagataattccagttgcagcaaagaaatttcaaatg 17103425  T
Q  465 tattttcaa-gccattatccatatcag 490  Q
    | | ||||| | ||||||| |||||||    
T  17103426 tctattcaatggcattatctatatcag 17103452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 464
Target Start/End: Original strand, 29076827 - 29076945
Alignment:
Q  347 tatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattgc 445  Q
    |||||||||||||||||| ||||| || |||||| | || ||||||| ||||| |||  |  ||||||||||| |||||| |||| |||||| || |||     
T  29076827 tatcagactctgatagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaatgaaatgaaacgaataatttcatttga 29076926  T
Q  446 agcaaaggaatttcaaatg 464  Q
    |||||| ||||||||||||    
T  29076927 agcaaatgaatttcaaatg 29076945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 10751593 - 10751554
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatg 80  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  10751593 gttttgatgataacaaagtattaaagaacaattggatatg 10751554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 473
Target Start/End: Original strand, 19960231 - 19960373
Alignment:
Q  330 tcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaac 429  Q
    |||||||||| | || | ||||||||| ||| ||||| |||||| ||||||||||| ||||| | ||| |  |||||| |||| |||||  | |||||||    
T  19960231 tcttctgaagatgtcaccatcagactcagatggtacactttgtcttcttctgaccacgtgcaaaaacata-caagaacttcaaagacaattggaatgaac 19960329  T
Q  430 ggataattccaattgcagcaaaggaatttcaaatgtattttcaa 473  Q
      |||||||   ||| |||||||||||||||||||| |||||||    
T  19960330 aaataattctttttgaagcaaaggaatttcaaatgtcttttcaa 19960373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 1616328 - 1616410
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaa 428  Q
    ||||||||||| ||||| ||| |||  ||||||||||||||||||| | ||||| ||||||  ||||||||||  ||||||||    
T  1616328 ctatcagactcagatagcacagtttaccctcttctgaccatgtgcacaaacaaacaaagaatttcaaggacaattgaaatgaa 1616410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 22666731 - 22666689
Alignment:
Q  43 tttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  22666731 tttgatgataataaattattaaagaacaattgaatatgctaat 22666689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 12398202 - 12398089
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||| ||| |||| ||||| ||||| ||||||||||  |||||||| | || | ||| ||||||| ||||| |||||| |||  |  ||||    
T  12398202 gttttgatgataataaagtattgaagaataattgaatatgctaatatatgttcaagtgtgcatgactatagattaaaatttaacaaggtctggatgtgta 12398103  T
Q  141 tatgagcatcagaa 154  Q
    || |||||||||||    
T  12398102 taagagcatcagaa 12398089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 17103214 - 17103270
Alignment:
Q  238 agaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataaga 294  Q
    ||||| ||||||| |||| |||||| |||||||||||| ||||||||||||| ||||    
T  17103214 agaagttgaagatttgcatcagactttgaagaccatcagactttgaaggacaaaaga 17103270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 19365699 - 19365762
Alignment:
Q  22 tttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||| |||||| | |||||||||||| || | |||| |||||| |||||||||||||||    
T  19365699 tttatacaacgcctataaagttttgatgatagcacactattgaagaacgattggatatgctaat 19365762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 450
Target Start/End: Original strand, 19362071 - 19362113
Alignment:
Q  409 tcaaggacaaaagaaatg-aacggataattccaattgcagcaa 450  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  19362071 tcaaggacaaaagaaatgaaacggataattctaattgcagcaa 19362113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 450
Target Start/End: Original strand, 19380711 - 19380753
Alignment:
Q  409 tcaaggacaaaagaaatg-aacggataattccaattgcagcaa 450  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  19380711 tcaaggacaaaagaaatgaaacggataattctaattgcagcaa 19380753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 465
Target Start/End: Original strand, 43282510 - 43282544
Alignment:
Q  431 gataattccaattgcagcaaaggaatttcaaatgt 465  Q
    |||||||||| ||||||||||||||||||||||||    
T  43282510 gataattccatttgcagcaaaggaatttcaaatgt 43282544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 26898469 - 26898360
Alignment:
Q  48 tgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtatatgagc 147  Q
    |||| ||||| ||||||||||| ||  |||||||||||  |||||||||| || || |||||| ||| ||||| |||||  ||| ||| ||||||  | |    
T  26898469 tgatcacaaagtattaaagaaccatatgatatgctaatgtatgttcaaatgtgcagaaccataaattaaaatttaacaaagtctgaacgtgtataaaaac 26898370  T
Q  148 atcagaagca 157  Q
    ||||||||||    
T  26898369 atcagaagca 26898360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 9985273 - 9985241
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattg 74  Q
    ||||||||||||||||||||| |||||||||||    
T  9985273 ttttgatgataacaaattattgaagaacaattg 9985241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 15650747 - 15650791
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  15650747 gttttgatgataataaagtattgaagaacaattggacatgctaat 15650791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 17496313 - 17496357
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    |||||||| |||||||| |||| |||||||||||||||| |||||    
T  17496313 gttttgataataacaaagtattgaagaacaattggatatactaat 17496357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 464
Target Start/End: Complemental strand, 22666377 - 22666269
Alignment:
Q  357 tgatagtacaattt-gtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaa 455  Q
    |||||||||||||| ||| |||||| |||| ||| ||| || || ||||||| |||||||||||   ||||||| |||||||||| ||  ||| ||  ||    
T  22666377 tgatagtacaattttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatgaacagataattccagtttaagcgaaaaaa 22666278  T
Q  456 tttcaaatg 464  Q
    |||||||||    
T  22666277 tttcaaatg 22666269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 41029753 - 41029625
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    |||||| |||||||||| || | ||||||||||||||||||| ||  ||||| || | || |||| |||| ||| ||||| | |||| ||| ||||| ||    
T  41029753 gttttgttgataacaaagtaatgaagaacaattggatatgctgatatatgtttaagtgtgcaggatcataaattaaaatttatcaaggtctgaacatata 41029654  T
Q  141 tatgagcatcagaagcataaaagaagcta 169  Q
    |   | ||||| |||||||| ||||||||    
T  41029653 tgataacatcataagcataagagaagcta 41029625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 297 - 463
Target Start/End: Complemental strand, 26576784 - 26576618
Alignment:
Q  297 ttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatac 396  Q
    |||||| |||||||||| || ||||| |||| |||||||| |||| ||||||||||||||  |||||||||||| || |||||| | |  ||||||||||    
T  26576784 ttgagggacctagaagcgacatcagacttgtcttcttctgtagctgtctctatcagactccaatagtacaatttttcttcttctaatctcgtgcagatac 26576685  T
Q  397 aaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaat 463  Q
    ||| ||||||| |||| |||||||  |||||||  ||||||||| ||||| ||||||||||||||||    
T  26576684 aaacaaagaacttcaaagacaaaaagaatgaacaaataattccagttgcaacaaaggaatttcaaat 26576618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 241 - 490
Target Start/End: Complemental strand, 28890520 - 28890270
Alignment:
Q  241 agctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagc 340  Q
    |||||||||||| || |||||| ||||||||  || ||| | ||| ||| ||||| |||||| |||||||  | ||||||||||  |  |||| || ||     
T  28890520 agctgaagatctacatcagactttgaagacctccagactctaaagtacaaaagatcttgagggacctagacaccacgtcagattcatcctcttatgtagt 28890421  T
Q  341 tatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattcca 440  Q
    | ||||||||| | ||||||  ||||||||||||||||||||||||||| ||| ||||| |  |||| ||||| |||||   ||||||| || |||||||    
T  28890420 tgtctctatcaaagtctgatcatacaatttgtcctcttctgaccatgtgtagaaacaaacatggaacttcaagaacaaagagaatgaacagaaaattcca 28890321  T
Q  441 attgcagcaaaggaatttcaaatgtattttcaa-gccattatccatatcag 490  Q
    |||  |||||||||||||| ||||| |  |||| | |||||||||||||||    
T  28890320 attttagcaaaggaatttcgaatgtctaatcaacgacattatccatatcag 28890270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 28890731 - 28890615
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||  || || || | || ||||||||||||| |||||||||||| |||  |||||||    
T  28890731 gttttgatgataacaaagtattaaagaataattggatatgctaatatatatttaagtgtgcaggaccatagattaaaattcaacaaggtctggacatgta 28890632  T
Q  141 tatgagcatcagaagca 157  Q
    || |||||||| |||||    
T  28890631 taagagcatcaaaagca 28890615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 465
Target Start/End: Original strand, 24502591 - 24502733
Alignment:
Q  323 tttgtgttcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaaga 422  Q
    |||||| |||||||||| | |||||||||||||| |||| ||  ||||||| | |||| | |||||||||| ||||| ||||||| | || ||||||||     
T  24502591 tttgtgctcttctgaagttgtctctatcagactcagataatatgatttgtcttattctaatcatgtgcagaaacaaacaaagaactttaatgacaaaagg 24502690  T
Q  423 aatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||||| || ||||| | |||||| |||||||||||||||||    
T  24502691 aatgaacagaaaattctagttgcagaaaaggaatttcaaatgt 24502733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 236 - 465
Target Start/End: Original strand, 23584784 - 23585013
Alignment:
Q  236 tcagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttct 335  Q
    ||||||||||||||||| || |||  ||||||||||  || ||| ||||| ||| |||| ||||||| ||  |||  |  ||| |||||||| ||||| |    
T  23584784 tcagaagctgaagatctacatcaggttctgaagacctccaaactctgaagtacagaagagtttgagggactcagactccgcgttagatttgtcttctttt 23584883  T
Q  336 gaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataa 435  Q
    | |||| ||||||||| | |||||||||||| |||||| | ||||||||| ||| | | ||||| ||||||| |||||||||||   |||||||||||      
T  23584884 gtagctgtctctatcaaagtctgatagtacactttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaagagaatgaacggattg 23584983  T
Q  436 ttccaattgcagcaaaggaatttcaaatgt 465  Q
    ||| | || || ||||| ||||||||||||    
T  23584984 ttctagtttcaacaaagaaatttcaaatgt 23585013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 25724323 - 25724482
Alignment:
Q  47 atgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtatatgag 146  Q
    ||||||||||| || | ||||||||||||||||| ||||  |||||||| | || ||||||||| ||| ||||| |||||| ||| |||||||||| |||    
T  25724323 atgataacaaagtactgaagaacaattggatatgataatatatgttcaactgtgcaggaccataaattaaaatttaacaaggtctaaacatgtataagag 25724422  T
Q  147 catcagaagcataaaagaagctagaaga-attggtaggagattttaagaaaggtcaatca 205  Q
    |||||||| ||||| | ||| || || |  ||||||| |||| | |||||||||||||||    
T  25724423 catcagaaacataagataagttaaaatactttggtagaagatatgaagaaaggtcaatca 25724482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 7321011 - 7321148
Alignment:
Q  20 aatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaat 119  Q
    ||||| ||||||| || ||| ||||||||||||||||| |||| |||||| |||  ||||||||||  ||||| || | || | ||||||||||| ||||    
T  7321011 aatttttacaatgtctctgaagttttgatgataacaaagtattgaagaactattttatatgctaatatatgtttaagtgtgcacgaccatagattaaaat 7321110  T
Q  120 tcaacaagatcttaacatgtatatgagcatcagaagca 157  Q
    ||| |||| ||| |||||||||  ||||||||||||||    
T  7321111 tcatcaaggtctgaacatgtatgagagcatcagaagca 7321148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 18527755 - 18527920
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattg 115  Q
    |||| |||| |||||| ||| | | |||||||| |||||||  ||||||||||||||| ||||||||||   ||||| || | || |||| ||||||||     
T  18527755 attgcatttgtacaatacctctaaagttttgattataacaagatattaaagaacaattagatatgctaaaatatgtttaagtgtgcaggatcatagatta 18527854  T
Q  116 aaattcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggta 181  Q
    ||||| | |||| ||| ||||| |||| |||||||||||||| || |||||||| |||| ||||||    
T  18527855 aaatttatcaaggtctgaacatatataagagcatcagaagcacaagagaagctaaaagacttggta 18527920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 24502382 - 24502455
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagatt 114  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||  || ||||| |||| || ||||||||||    
T  24502382 gttttgatgataataaagtattaaagaacaattggatatgctaatatatattcaagtatgcagtaccatagatt 24502455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 24276857 - 24276973
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||||| ||||  |||||||||||||||| ||||  |||||||  |  | ||||| ||||||| |  || |||||| ||| ||||||||    
T  24276857 gttttgatgataacaaagtattgtagaacaattggatatgttaatatatgttcatgtgcgtaggacaatagattaatttttaacaaggtctgaacatgta 24276956  T
Q  141 tatgagcatcagaagca 157  Q
    || ||||||||||||||    
T  24276957 taagagcatcagaagca 24276973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 24308550 - 24308662
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||||| ||||||| || |||||||||||  |||  |||||||| |  | ||||||||| ||| ||||| |||||| | | ||||||||    
T  24308550 gttttgatgataacaaagtattaaataaaaattggatatgtgaatatatgttcaagtgcgcaggaccataaattaaaatttaacaaggtttgaacatgta 24308649  T
Q  141 tatgagcatcaga 153  Q
    || ||||||||||    
T  24308650 taagagcatcaga 24308662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 447
Target Start/End: Original strand, 25724654 - 25724746
Alignment:
Q  355 tctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcag 447  Q
    ||||||||||||| ||||| |||| | |||| ||| ||||||||| ||||||  |||||||||||   |||||| ||||||||||||||||||    
T  25724654 tctgatagtacaaattgtcttcttataaccacgtgtagatacaaacaaagaatttcaaggacaaagagaatgaaaggataattccaattgcag 25724746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 465
Target Start/End: Original strand, 23520952 - 23521074
Alignment:
Q  343 tctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaat 442  Q
    ||||||| | |||||||| |||||||||||| |||| |||||| ||| | | ||| | ||| ||| |||||||||||   |||||| |||||||||   |    
T  23520952 tctctattaaactctgattgtacaatttgtcatcttttgaccacgtgtaaaaacagacaaaaaacttcaaggacaaagagaatgaatggataattcatgt 23521051  T
Q  443 tgcagcaaaggaatttcaaatgt 465  Q
    |||||||||| ||||||||||||    
T  23521052 tgcagcaaagtaatttcaaatgt 23521074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 25727255 - 25727316
Alignment:
Q  99 tgaaggaccatagattgaaattcaacaagatcttaacatgtatatgagcatcagaagcataa 160  Q
    ||||| |||||||||| ||||| |||||| ||| |||||||||| |||||||||||||||||    
T  25727255 tgaagaaccatagattaaaatttaacaaggtctgaacatgtataagagcatcagaagcataa 25727316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 465
Target Start/End: Original strand, 24277175 - 24277287
Alignment:
Q  353 actctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaag 452  Q
    |||||||||||||| ||| || |||||| |||| ||| |||  |||| ||| ||| |||||||||||   ||||||||||||||| || || ||  ||||    
T  24277175 actctgatagtacactttatcttcttctaaccacgtgtagaagcaaacaaataacttcaaggacaaagagaatgaacggataatttcagtttcaataaag 24277274  T
Q  453 gaatttcaaatgt 465  Q
    |||||||||||||    
T  24277275 gaatttcaaatgt 24277287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 12863870 - 12863736
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattg 115  Q
    ||||||||| ||||||| |  ||| ||||||||||||||||| |||| || |||||||||||||| ||||   |||| || | || ||||||||| |||     
T  12863870 attgaatttgtacaatgtcactgaagttttgatgataacaaagtattgaacaacaattggatatgttaatatgtgtttaagtgtgcaggaccatatatta 12863771  T
Q  116 aaattcaacaagatcttaacatgtatatgagcatc 150  Q
    ||||| |  ||| ||| ||||| |||| |||||||    
T  12863770 aaatttattaaggtctgaacatatataagagcatc 12863736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 18789689 - 18789651
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatat 79  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  18789689 gttttgatgataacaaaatattaaagaacaattggatat 18789651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 23584602 - 23584698
Alignment:
Q  61 ttaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtatatgagcatcagaagca 157  Q
    |||||||||||||| ||||||||||  |||||||| |  | |||||||| |||| ||||| || ||| | | |||||||||| |||||||| |||||    
T  23584602 ttaaagaacaattgaatatgctaatatatgttcaagtgcgcaggaccattgattaaaatttaataaggtttgaacatgtataagagcatcataagca 23584698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 25727536 - 25727592
Alignment:
Q  409 tcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    |||||||||||   |||| | |||||||||||||||||| |||||||||||||||||    
T  25727536 tcaaggacaaagagaatggaaggataattccaattgcagtaaaggaatttcaaatgt 25727592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 473
Target Start/End: Original strand, 33925482 - 33925626
Alignment:
Q  330 tcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aa 428  Q
    |||||||||| | || ||||||||||  ||  ||||| ||| |  ||||||||||| ||||||  ||||| ||||||| |||| |||||| |||||| ||    
T  33925482 tcttctgaagatgtcactatcagactgagacggtacatttttttttcttctgaccacgtgcaggaacaaacaaagaacttcaaagacaaatgaaatgaaa 33925581  T
Q  429 cggataattccaattgcagcaaaggaatttcaaatgtattttcaa 473  Q
     |||||||||   ||| ||||||| |||||||||| | |||||||    
T  33925582 tggataattcattttgaagcaaagaaatttcaaatatcttttcaa 33925626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 17872014 - 17872085
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccataga 112  Q
    ||||||||||||||||  ||| ||||||||||| |||||||||||   ||||||| |||| |||| ||||||    
T  17872014 gttttgatgataacaatgtataaaagaacaatttgatatgctaatttgtgttcaagtatgcaggatcataga 17872085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 34062321 - 34062380
Alignment:
Q  353 actctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaa 412  Q
    ||||| ||||||||||||||| |||| |||||| ||||||| ||||| ||||||| ||||    
T  34062321 actctaatagtacaatttgtcttcttgtgaccacgtgcagaaacaaacaaagaacttcaa 34062380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 17872341 - 17872375
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttct 380  Q
    |||||||||||| ||||||||||||||||||||||    
T  17872341 ctatcagactctaatagtacaatttgtcctcttct 17872375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Original strand, 12012432 - 12012465
Alignment:
Q  431 gataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||||||||||| |||||||||||||||||||    
T  12012432 gataattccaattgaagcaaaggaatttcaaatg 12012465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 6587137 - 6587201
Alignment:
Q  22 tttatacaatgcctatgacgttttgatgataacaaattat-taaagaacaattggatatgctaat 85  Q
    |||||||||||||| ||| |||||||| |||||||| | |  |||||||||||||||||| ||||    
T  6587137 tttatacaatgcctctgaagttttgattataacaaagtctagaaagaacaattggatatgttaat 6587201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 13303587 - 13303543
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||    
T  13303587 gttttgatgataacaaaatattgaaaaacaattggatatactaat 13303543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 9796634 - 9796481
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattg 115  Q
    ||||| ||| ||||||  || ||| ||||||||||||| ||| |||||||||||||||||||||| ||||  |||||||| | || |||| ||||||||     
T  9796634 attgattttgtacaatttctctgaagttttgatgataataaagtattaaagaacaattggatatgttaatatatgttcaagtgtgcaggatcatagatta 9796535  T
Q  116 aaattcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagcta 169  Q
    ||||| |||||| ||| |||||||||| |||||||||||||| |||||||||||    
T  9796534 aaatttaacaaggtctgaacatgtataagagcatcagaagcacaaaagaagcta 9796481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 238 - 465
Target Start/End: Original strand, 13291560 - 13291788
Alignment:
Q  238 agaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctga 337  Q
    ||||| ||||||||| || |||| | |||||| ||||| ||| ||||| ||| |||||  ||||| ||| | |||| ||||||||||| |  |||| ||     
T  13291560 agaagttgaagatctacatcagattatgaagagcatcagactctgaagtacagaagatcctgagggacccaaaagccacgtcagatttatcctcttttgt 13291659  T
Q  338 agctatctctatca-gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataat 436  Q
    || | ||||||| | | | |||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||  |||||||||||  ||||||||||||||    
T  13291660 agatgtctctataaaggcactgatagtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatgaacggataat 13291759  T
Q  437 tccaattgcagcaaaggaatttcaaatgt 465  Q
    | || || || ||||| ||||||||||||    
T  13291760 ttcagtttcaacaaagaaatttcaaatgt 13291788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 14426905 - 14427020
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||| |||||||||||||||||||||||||||  |||||||| | || ||||||| ||||| ||||| |||||  ||| || ||||||    
T  14426905 ttttgatgataacaaagtattaaagaacaattggatatgctaatatatgttcaagtgtgcaggaccaaagattaaaatttaacaaagtctgaaaatgtat 14427004  T
Q  142 atgagcatcagaagca 157  Q
    | ||||||||||||||    
T  14427005 aagagcatcagaagca 14427020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 17637167 - 17637283
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||  |||||||| |||| || |||||| ||| ||||| |||||| ||| ||||||||    
T  17637167 gttttgatgataacaaattagtaaagaacaattggatatgctgatatatgttcaagtatggagaaccatatattaaaattaaacaaggtctgaacatgta 17637266  T
Q  141 tatgagcatcagaagca 157  Q
     |  |||||||||||||    
T  17637267 caaaagcatcagaagca 17637283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 238 - 441
Target Start/End: Original strand, 14427095 - 14427298
Alignment:
Q  238 agaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctga 337  Q
    ||||| ||||||||| || |||| ||||||||||||||| || ||||| ||| ||| | |||||| ||  | |  | ||||||||||||| ||||||||     
T  14427095 agaagttgaagatctacatcagaatctgaagaccatcatgctctgaagtacaaaagttattgagggactcatacaccacgtcagatttgtcttcttctgt 14427194  T
Q  338 agctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataatt 437  Q
    || | ||||||||| | ||||||||||||||||||| | |||| |||| ||| | | ||||| ||||||| ||||||||| |   ||||||| |||||||    
T  14427195 agttgtctctatcaaagtctgatagtacaatttgtctttttctaaccacgtgtataaacaaacaaagaacttcaaggacatagagaatgaacagataatt 14427294  T
Q  438 ccaa 441  Q
    ||||    
T  14427295 ccaa 14427298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 269
Target Start/End: Original strand, 38076025 - 38076259
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    ||||||||| |||||| |||| |||||||||| ||||| |||||  ||| |||| | || |  |||||| ||| ||||| |||||| ||| |||||||||    
T  38076025 ttttgatgacaacaaagtattgaagaacaattagatatactaatatatgctcaagtgtgcataaccatatattaaaatttaacaaggtctgaacatgtat 38076124  T
Q  142 atgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaatcatgggtcaacacttcagactagaagaaagga----- 235  Q
    | |||||||||||||| || ||||||||  ||| | |||||| |||||| |||||||||||| ||   ||| |||| |  ||  |||||||||||         
T  38076125 aagagcatcagaagcacaatagaagctaatagactatggtagaagatttgaagaaaggtcaaccagaagtcgacaccttggatcagaagaaaggaagtca 38076224  T
Q  236 -tcagaagctgaagatctgcaccagactctgaaga 269  Q
     |||||||||||||||||||| |||||||| ||||    
T  38076225 ctcagaagctgaagatctgcatcagactctaaaga 38076259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 4515111 - 4514998
Alignment:
Q  44 ttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtatat 143  Q
    |||||||||||||| |||| || ||||| |||||||| ||||  |||||||| | || ||||||||| ||| ||||| |||||| ||| ||||||||||     
T  4515111 ttgatgataacaaagtattgaaaaacaactggatatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaacaaggtctgaacatgtataa 4515012  T
Q  144 gagcatcagaagca 157  Q
    ||||||||||||||    
T  4515011 gagcatcagaagca 4514998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 4767355 - 4767456
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  |||||||| | || ||||| ||||||| ||||| |||||| ||| ||||||||    
T  4767355 gttttgatgataacaaagtattaaagaataattagatatgctaatatatgttcaagtgtgcaggacgatagatttaaatttaacaaggtctgaacatgta 4767454  T
Q  141 ta 142  Q
    ||    
T  4767455 ta 4767456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 463
Target Start/End: Original strand, 42250710 - 42250828
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccaattg 444  Q
    ||||||||| ||  |||||||||||||| |||||| |||  ||||| | ||||||||||||| |||| |||||| | |||| ||| ||||||||||||||    
T  42250710 ctatcagacactagtagtacaatttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatggaatgaaacagataattccaattg 42250809  T
Q  445 cagcaaaggaatttcaaat 463  Q
     ||||||| ||||||||||    
T  42250810 aagcaaagaaatttcaaat 42250828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 490
Target Start/End: Complemental strand, 10929069 - 10928936
Alignment:
Q  358 gatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatt 457  Q
    |||| ||||||||||||||||||||||||||| ||| ||||| || |||| ||||||| |||   |||||| ||||||||||| || |||||| ||||||    
T  10929069 gataatacaatttgtcctcttctgaccatgtgtagaaacaaacaaggaacttcaaggataaagagaatgaatggataattccagtttcagcaatggaatt 10928970  T
Q  458 tcaaatgtattttcaa-gccattatccatatcag 490  Q
    |  ||||| |  |||| | |||||||||||||||    
T  10928969 ttgaatgtctaatcaatggcattatccatatcag 10928936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 17034124 - 17034249
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaaca 125  Q
    |||||||||| ||| ||||||||||||||||  |||| ||||||||||||||||| ||||  |||||||| | || | || |||||||| | ||| ||||    
T  17034124 tacaatgcctctgaagttttgatgataacaatgtattgaagaacaattggatatgttaatacatgttcaagtgtgcacgatcatagattaatatttaaca 17034223  T
Q  126 agatcttaacatgtatatgagcatca 151  Q
    || | | |||||||||| ||||||||    
T  17034224 aggtttgaacatgtataagagcatca 17034249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 344 - 461
Target Start/End: Complemental strand, 17119144 - 17119027
Alignment:
Q  344 ctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaatt 443  Q
    |||||||||| | || |||||||||||||| |||||||| || ||  ||| ||||| ||||||| |||||||||||   ||||||| |||||||||| ||    
T  17119144 ctctatcagagtatgctagtacaatttgtcttcttctgatcacgtatagaaacaaacaaagaacttcaaggacaaagagaatgaactgataattccagtt 17119045  T
Q  444 gcagcaaaggaatttcaa 461  Q
     | |||||||||||||||    
T  17119044 tccgcaaaggaatttcaa 17119027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 490
Target Start/End: Original strand, 19306927 - 19307059
Alignment:
Q  359 atagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaattt 458  Q
    |||||||| ||| ||||||||||| || || |||| ||||| | ||||| |||||||||||| ||||||||  ||||||||||||  |||||||||||||    
T  19306927 atagtacattttctcctcttctgatcacgtacagaaacaaacatagaacttcaaggacaaaaaaaatgaactaataattccaatttgagcaaaggaattt 19307026  T
Q  459 caaatgtattttcaa-gccattatccatatcag 490  Q
      || ||||  ||||  ||||||||||||||||    
T  19307027 tgaacgtataatcaacaccattatccatatcag 19307059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 17119481 - 17119349
Alignment:
Q  26 tacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaaca 125  Q
    |||||| ||||| | ||||| ||||||||||| ||||||||||| ||| | |||| ||||  ||||| || | || ||||||||||||| ||||| ||||    
T  17119481 tacaattcctataaggtttttatgataacaaagtattaaagaactatttggtatgttaatatatgtttaagtgtgcaggaccatagattaaaatttaaca 17119382  T
Q  126 agatcttaacatgtat-atgagcatcagaagca 157  Q
    |  ||| ||||||||| | ||||||||||||||    
T  17119381 aagtctgaacatgtataaagagcatcagaagca 17119349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 13291360 - 13291478
Alignment:
Q  43 tttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtata 142  Q
    |||||| |||||||| |||| |||||||||| |||||| ||||  |||||||| | || ||||||| ||||| ||||| ||||| |||| |||||  |||    
T  13291360 tttgataataacaaagtattgaagaacaattagatatgttaatatatgttcaagtgtgcaggaccaaagatt-aaatttaacaaaatctgaacataaata 13291458  T
Q  143 tgagcatcagaagcataaaa 162  Q
     |||||||||||||| ||||    
T  13291459 agagcatcagaagcacaaaa 13291478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 20311361 - 20311415
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaa 95  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||  ||||||||    
T  20311361 gttttgatgataacaaagtatttaagaacaattggatatgctaatatatgttcaa 20311415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 5554650 - 5554687
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatat 79  Q
    |||||||||||||||| |||||||||||||||||||||    
T  5554650 ttttgatgataacaaaatattaaagaacaattggatat 5554687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 14328744 - 14328691
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttca 94  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||||  |||||||    
T  14328744 gttttgatgataacaaagtattgaagaacagttggatatgctaatatatgttca 14328691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 23953632 - 23953672
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgc 81  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  23953632 gttttgatgataacaaagtattaaagaacaattggaaatgc 23953672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 8108800 - 8108871
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccataga 112  Q
    ||||||||||||||||| ||| |||||||||| | ||||||||||   ||||||| |||| |||| ||||||    
T  8108800 gttttgatgataacaaagtataaaagaacaatggaatatgctaatgtgtgttcaagtatgtaggatcataga 8108871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 12129124 - 12129223
Alignment:
Q  22 tttatacaatgcctatgacgttttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaatt 120  Q
    |||||||||| ||| | | ||||||||||||| ||| ||| ||| ||||||||| ||||||||||  |||||||  |||| ||||||||| ||| |||||    
T  12129124 tttatacaatccctcttaagttttgatgataataaaatataaaaagaacaattgaatatgctaatatatgttcatgtatgtaggaccataaattaaaatt 12129223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 4244440 - 4244324
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    |||||||||||||||||  ||| ||||||||||||||| | ||||   ||||||| | || | || |||||||| ||||| | |||| ||| ||||| ||    
T  4244440 gttttgatgataacaaaacattgaagaacaattggataagttaatatgtgttcaagtgtgcaagatcatagattaaaatttatcaagttctgaacatata 4244341  T
Q  141 tatgagcatcagaagca 157  Q
    |  ||||||| ||||||    
T  4244340 tgagagcatctgaagca 4244324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 4508251 - 4508179
Alignment:
Q  346 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaa 418  Q
    ||||||||||| ||||||| | ||||||||||| ||| || ||||||| | | | ||||||| ||||||||||    
T  4508251 ctatcagactcagatagtatattttgtcctcttttgatcacgtgcagaaatagacaaagaacttcaaggacaa 4508179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 9828969 - 9829013
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||  ||| ||||||||||| |||||||||||    
T  9828969 gttttgatgataacaatgtataaaagaacaattagatatgctaat 9829013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 14332722 - 14332678
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    |||||||| |||||||| |||| ||||||| ||||||||||||||    
T  14332722 gttttgattataacaaagtattgaagaacagttggatatgctaat 14332678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 24865866 - 24865678
Alignment:
Q  17 ttgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattga 116  Q
    |||| |||||||||||||| | | ||||||||||||||||| |||  || |||||||||||||| | ||  ||| |||| |||| |||| |||| ||| |    
T  24865866 ttgactttatacaatgcctctaaagttttgatgataacaaagtatataaaaacaattggatatgttgatatatggtcaagtatgcaggatcataaattaa 24865767  T
Q  117 aattcaacaagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaatca 205  Q
    |||| ||||| |||| ||||| ||||||||||||||||||| || ||||| || || | ||||||| |||| | |||||||||||||||    
T  24865766 aatttaacaaaatctgaacatatatatgagcatcagaagcacaagagaagttaaaatacttggtagaagatatgaagaaaggtcaatca 24865678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 19144008 - 19143893
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||  |||||||| | |||||||||||||||| ||||| |||||| ||| |||||||||    
T  19144008 tttttatgataacaaagtattaaataacaattggatatgctaatatatgttcaattgtgaaggaccatagattaaaatttaacaaggtctgaacatgtat 19143909  T
Q  142 atgagcatcagaagca 157  Q
    | |||||| |||||||    
T  19143908 aagagcattagaagca 19143893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 20743407 - 20743292
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||  |||||||| | |||||||||||||||| ||||| |||||| ||| |||||||||    
T  20743407 tttttatgataacaaagtattaaataacaattggatatgctaatatatgttcaattgtgaaggaccatagattaaaatttaacaaggtctgaacatgtat 20743308  T
Q  142 atgagcatcagaagca 157  Q
    | |||||| |||||||    
T  20743307 aagagcattagaagca 20743292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 236 - 465
Target Start/End: Complemental strand, 1783239 - 1783009
Alignment:
Q  236 tcagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttct 335  Q
    ||||||| |||| ||||||| ||||||  ||||||||||| ||| ||| | | |||  ||  ||||| ||| |||||  |||||| ||||||  ||||||    
T  1783239 tcagaagttgaaaatctgcatcagacttggaagaccatcagactctgaggaatatagaatcatgagggacccagaagacacgtcatatttgtcctcttct 1783140  T
Q  336 gaagctatctctatca-gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggata 434  Q
    | || | |||| |||| |||||||||||||||||||||||||||||||||| ||| | | | ||| ||||||| ||||| |||||   ||||||||||||    
T  1783139 gtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggata 1783040  T
Q  435 attccaattgcagcaaaggaatttcaaatgt 465  Q
    |||||  ||| || |||||||||||||||||    
T  1783039 attcccgttgtagtaaaggaatttcaaatgt 1783009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 491
Target Start/End: Complemental strand, 32958029 - 32957573
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||| ||| |||||||||||||||||||||||| || ||||||| | | ||   || |||| ||| ||||| |||||| | | |||||||||    
T  32958029 ttttgatgataataaaatattaaagaacaattggatatgcttataaatgttctagtgtgcgagatcatatattaaaatttaacaaggtttgaacatgtat 32957930  T
Q  142 atgagcatcagaagcataaaagaagctagaagaat-tggtaggagattttaagaaaggtcaatcatgggtcaacacttcagactagaagaaaggat---- 236  Q
      ||||||||||| ||  | |||||||  |||| | |||||  |||| | |||||||||||  ||   || ||||| |  ||  |||||||| |||        
T  32957929 gagagcatcagaaacacgagagaagctcaaagactatggtattagatctgaagaaaggtcagccagaagttaacacattggatgagaagaaaagatgtta 32957830  T
Q  237 --cagaagctgaagatctgcaccagactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttc 334  Q
      |||||||||||||||| || |||||||| ||||||  || | | |||||  || ||||| |||||| ||  |||    |||||||||||||  | |||    
T  32957829 ctcagaagctgaagatctacatcagactcttaagacctccaaaatctgaagtgcaaaagatcttgagggactcagacttcacgtcagatttgtccttttc 32957730  T
Q  335 tgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggata 434  Q
    |  || | ||||||||| | ||||||| ||||||||||| | |||||||||  || ||| ||||| ||||||| |||||||||||   ||||||| ||||    
T  32957729 tatagttgtctctatcaaaatctgataatacaatttgtctt-ttctgaccacatgtagaaacaaacaaagaacttcaaggacaaagataatgaacagata 32957631  T
Q  435 attccaattgcagcaaaggaatttcaaatgtattttcaa-gccattatccatatcaga 491  Q
    |||||| || ||||||||||||||| ||||| |  |||| | ||||||||||||||||    
T  32957630 attccagtttcagcaaaggaatttcgaatgtctaatcaacgacattatccatatcaga 32957573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 465
Target Start/End: Complemental strand, 12733732 - 12733597
Alignment:
Q  330 tcttctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaac 429  Q
    |||| ||||| | ||||||| |||| | ||||||| | |||||| ||||||||  || |||||||||||| ||||||| ||||||||||||  |||||||    
T  12733732 tcttatgaagttgtctctattagacgcagatagtaaagtttgtcttcttctgattatttgcagatacaaacaaagaacttcaaggacaaaaagaatgaac 12733633  T
Q  430 ggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    | ||||| ||| |||||| ||| |||||||||||||    
T  12733632 gaataatcccagttgcagtaaatgaatttcaaatgt 12733597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 465
Target Start/End: Complemental strand, 5265464 - 5265260
Alignment:
Q  258 agactctgaagaccatcatactttgaaggacataagattttgaggaacctagaagcaacgtcagatttgtgttcttctgaagctatctctatcagactct 357  Q
    |||||| || |||||||| |||  |||| |||||||| | ||||| ||| |||||| ||||||||||||| |||||||| || | ||||||||| |||||    
T  5265464 agactccgatgaccatcaaactccgaagtacataagactctgagggacccagaagccacgtcagatttgtcttcttctgtagttgtctctatcaaactct 5265365  T
Q  358 gatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatt 457  Q
    ||||||||| ||| || |||||| || | |||  || ||| | |||||||||    ||||||   ||||| |  |||||| |||||||| ||||||||||    
T  5265364 gatagtacagtttttcatcttctaactacgtgtggaaacagacaaagaacct---agacaaagagaatgaccaaataatttcaattgcatcaaaggaatt 5265268  T
Q  458 tcaaatgt 465  Q
    ||||||||    
T  5265267 tcaaatgt 5265260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 17891053 - 17891168
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||  ||||| |  | || ||||||||||||| ||||| |||||| | | |||  |||    
T  17891053 gttttgatgataacaaaatattaaagaacaattagatatgctaatatatgtt-aggtgtgcaggaccatagattaaaatttaacaaggtatgaactggta 17891151  T
Q  141 tatgagcatcagaagca 157  Q
    || ||||||||||||||    
T  17891152 taagagcatcagaagca 17891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 27706974 - 27707090
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    ||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||||   || | ||||||| ||| ||||| ||||||   | ||||||||    
T  27706974 gttttgatggtaacaaagtattaaagaataattagatatgctaattaatgttcaagcgtgcaagaccataaattaaaatttaacaaggcatgaacatgta 27707073  T
Q  141 tatgagcatcagaagca 157  Q
    || ||||||||||||||    
T  27707074 taagagcatcagaagca 27707090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 10646486 - 10646612
Alignment:
Q  48 tgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtatatgagc 147  Q
    |||||||||| |||| || |||||||||||||| |||   |||||||| | || ||||||||| | | ||||| |||||| ||| |||||||||| ||||    
T  10646486 tgataacaaagtattgaataacaattggatatgttaacatatgttcaagtgtgcaggaccatataataaaatttaacaaggtctgaacatgtataagagc 10646585  T
Q  148 atcagaagcataaaagaagctagaaga 174  Q
    ||||||| || || |||||||| ||||    
T  10646586 atcagaaacacaagagaagctaaaaga 10646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 465
Target Start/End: Original strand, 27707299 - 27707420
Alignment:
Q  343 tctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaat 442  Q
    ||||||||| | ||| |||||||||||||||||||||||||||  || ||| ||||| ||||||| |||| |||||||  ||| ||| ||||||| || |    
T  27707299 tctctatcaaagtctaatagtacaatttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaaaagaataaactgataatttcagt 27707398  T
Q  443 tgcagcaaaggaatttcaaatgt 465  Q
    |  ||| ||||||||||||||||    
T  27707399 tttagc-aaggaatttcaaatgt 27707420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 26822450 - 26822371
Alignment:
Q  340 ctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaa 419  Q
    |||||||||||| | |||||||||||||||| || |||||| || ||||| ||| ||||| ||||||| |||||||||||    
T  26822450 ctatctctatcaaaatctgatagtacaatttatcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaaa 26822371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 1775270 - 1775324
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaa 95  Q
    |||||||||||||||||||||| || || ||||||||||||||||| ||||||||    
T  1775270 gttttgatgataacaaattattgaataataattggatatgctaatctatgttcaa 1775324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 7560979 - 7561045
Alignment:
Q  333 tctgaagctatctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaa 399  Q
    ||||||| ||||| |||||||||| |||||||||||||||| |||||| | | ||||||||||||||    
T  7560979 tctgaagttatctttatcagactcagatagtacaatttgtcttcttcttatcgtgtgcagatacaaa 7561045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 465
Target Start/End: Original strand, 17891356 - 17891454
Alignment:
Q  366 aatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    |||||||||| |  |||||| ||| ||| ||||| ||||||  |||||||||||   |||||| ||||||||||| || |||||||||||||||||||||    
T  17891356 aatttgtcctttgttgaccacgtgtagaaacaaacaaagaatttcaaggacaaagataatgaatggataattccagtt-cagcaaaggaatttcaaatgt 17891454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 465
Target Start/End: Original strand, 10646762 - 10646876
Alignment:
Q  351 agactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaa 450  Q
    |||||||||||||| | |||||| |||||| |  |  || ||| ||||| ||||||| |||||||||||   |||||||  ||||||||| || ||| ||    
T  10646762 agactctgatagtatagtttgtcatcttctaagtaactgtagaaacaaacaaagaacttcaaggacaaagagaatgaacaaataattccagttacagaaa 10646861  T
Q  451 aggaatttcaaatgt 465  Q
    |||||||||||||||    
T  10646862 aggaatttcaaatgt 10646876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 10924702 - 10924664
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatat 79  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  10924702 gttttgatgataacaaaatattaaagaacaattggatat 10924664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 5740865 - 5740800
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggac 106  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||||   ||||||||| || |||||    
T  5740865 gttttgatgattacaaagtataaaagaacaattggatatgctaatgtgtgttcaaatgtgtaggac 5740800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 20095155 - 20095038
Alignment:
Q  353 actctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaag 452  Q
    |||| ||||||||| |||||| ||||||||||||||||||| |   | ||| ||| |||  |||||| | ||||||| |||||||||  ||| ||||||     
T  20095155 actcagatagtacactttgtcttcttctgaccatgtgcagaaatggacaaa-aacatca--gacaaatggaatgaacagataattccttttgaagcaaat 20095059  T
Q  453 gaatttcaaatgtattttcaa 473  Q
    ||||||||||||||| |||||    
T  20095058 gaatttcaaatgtatgttcaa 20095038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 957028 - 956964
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatg 80  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| || | |||||| |||| |||||    
T  957028 attgaatttgtacaatgcctctgaagttttgatgataacaaagtaatgaagaacgattgaatatg 956964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 8106093 - 8106049
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||    
T  8106093 gttttgatgataacaaagtattaaagaataattagatatgctaat 8106049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 26822734 - 26822654
Alignment:
Q  41 gttttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaatt 120  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||  ||||| || | || || |||||||||| |||||    
T  26822734 gttttgataataacaaagtattaaaagaacaattggatatgctaatatatgtttaagtgtgtagtaccatagattaaaatt 26822654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 1767650 - 1767567
Alignment:
Q  346 ctatcagactct-gatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaa 428  Q
    |||||||||||| |||| |||| ||||||  ||||||||||  |||| ||||||| ||||||  ||||||||||||| ||||||    
T  1767650 ctatcagactctagataatacagtttgtcaacttctgaccacatgcatatacaaacaaagaaattcaaggacaaaaggaatgaa 1767567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 4451041 - 4450959
Alignment:
Q  391 agatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgtattttcaa 473  Q
    ||||||||| ||||||| ||||  ||| | | || ||||||||||||||  || | ||||||||||||||||||| |||||||    
T  4451041 agatacaaacaaagaacttcaacaacagatggaacgaacggataattcctctttctgcaaaggaatttcaaatgtcttttcaa 4450959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 7185280 - 7185322
Alignment:
Q  43 tttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||    
T  7185280 tttgatgataacaaagtattgaaggacaattggatatgctaat 7185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 23022384 - 23022462
Alignment:
Q  124 caagatcttaacatgtatatgagcatcagaagcataaaagaagctagaagaattggtaggagattttaagaaaggtcaa 202  Q
    |||| ||| ||||| |||| || ||||| ||||| || ||||||||||||| ||||||| |||| | ||||||||||||    
T  23022384 caaggtctgaacatatataagaacatcataagcaaaagagaagctagaagacttggtagaagatatgaagaaaggtcaa 23022462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 12341765 - 12341696
Alignment:
Q  16 attgaatttatacaatgcctatgacgttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    |||| |||| |||||||||| | |  |||||||||||||||| |||||||||| ||||| ||||| ||||    
T  12341765 attggatttgtacaatgcctctaaaattttgatgataacaaagtattaaagaaaaattgaatatgttaat 12341696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 7560724 - 7560756
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaatt 73  Q
    ||||||||||||||||| |||||||||||||||    
T  7560724 gttttgatgataacaaagtattaaagaacaatt 7560756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 11608818 - 11608926
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgta 140  Q
    |||||||||||||  |  ||||||||||||||| |||||||||||   |||| || |||| |||| |||||||| || || | |||| ||| ||||| ||    
T  11608818 gttttgatgataattaggtattaaagaacaattagatatgctaatttgtgttaaagtatgcaggagcatagattaaattttatcaagttctgaacatata 11608917  T
Q  141 tatgagcat 149  Q
    || ||||||    
T  11608918 taagagcat 11608926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 15757769 - 15757849
Alignment:
Q  385 atgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||||||||||||| ||||||  | |||||| |||  ||||||| || ||||||| |||||| ||| ||| |||||||||    
T  15757769 atgtgcagatacaaacaaagaaatttaaggactaaaagaatgaacagacaattccagttgcagtaaatgaacttcaaatgt 15757849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 19142398 - 19142430
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattg 74  Q
    |||||||||||||||| ||||||||||||||||    
T  19142398 ttttgatgataacaaagtattaaagaacaattg 19142430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 20741797 - 20741829
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattg 74  Q
    |||||||||||||||| ||||||||||||||||    
T  20741797 ttttgatgataacaaagtattaaagaacaattg 20741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 39227733 - 39227785
Alignment:
Q  354 ctctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaa 406  Q
    |||||||||||||||||||  ||||||||||| ||||||| | ||| ||||||    
T  39227733 ctctgatagtacaatttgttttcttctgaccacgtgcagaaataaacaaagaa 39227785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 473
Target Start/End: Complemental strand, 4438 - 4317
Alignment:
Q  351 agactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaa 450  Q
    |||||| ||||||| | |||||| |||||||| || ||||||||||||| || |||| ||||||||||| | |||||||||||||||||   | || |||    
T  4438 agactcagatagtatattttgtcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaacggataattccttgttcaacaa 4340  T
Q  451 aggaatttcaaatgtattttcaa 473  Q
    ||||||||||||||  |||||||    
T  4339 aggaatttcaaatgacttttcaa 4317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 7342 - 7241
Alignment:
Q  358 gatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaa-cggataattccaattgcagcaaaggaat 456  Q
    |||| ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||  | |||||| || |||||| || ||| |||||||||||    
T  7342 gataatacaatttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaat 7243  T
Q  457 tt 458  Q
    ||    
T  7242 tt 7241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 137166 - 137084
Alignment:
Q  346 ctatcagactctga-tagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaa 428  Q
    |||||||||||||| ||||||||||||||  ||||| |||| ||||||||||||| ||||||  ||||||||||||||||||||    
T  137166 ctatcagactctgaatagtacaatttgtcaccttctcaccacgtgcagatacaaacaaagaa-ttcaaggacaaaagaaatgaa 137084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 1368 - 1267
Alignment:
Q  358 gatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaa-cggataattccaattgcagcaaaggaat 456  Q
    |||| |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||  | |||||| || |||||| || ||| |||||||||||    
T  1368 gataatacagtttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaat 1269  T
Q  457 tt 458  Q
    ||    
T  1268 tt 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 63 - 178
Alignment:
Q  42 ttttgatgataacaaattattaaagaacaattggatatgctaatcaatgttcaaatatgaaggaccatagattgaaattcaacaagatcttaacatgtat 141  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||  ||||||||   || |||| | |||||| ||||| |||||| ||| || ||||||    
T  63 ttttgatgataacaaagtattaaagaacaattagatatgttaatatatgttcaagagtgcaggatcttagattaaaatttaacaaggtctaaatatgtat 162  T
Q  142 atgagcatcagaagca 157  Q
    |  |||| ||||||||    
T  163 aaaagcaccagaagca 178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 465
Target Start/End: Complemental strand, 6017 - 5895
Alignment:
Q  343 tctctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaat 442  Q
    ||||||||| | | ||||| |||| |||||| ||||||||| | ||| | | ||||| ||||||| ||| |||||||   ||||||  |||||||| | |    
T  6017 tctctatcaaaatttgataatacagtttgtcttcttctgacaacgtgtaaaaacaaagaaagaacttcagggacaaagagaatgaatagataattcaagt 5918  T
Q  443 tgcagcaaaggaatttcaaatgt 465  Q
    | |||||||||||||||||||||    
T  5917 ttcagcaaaggaatttcaaatgt 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 438
Target Start/End: Original strand, 8899 - 8984
Alignment:
Q  353 actctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattc 438  Q
    |||| ||||||||| |||||| ||||||||  | ||||| ||||||| || |||||||||||  ||| ||||| ||||||||||||    
T  8899 actcagatagtacactttgtcttcttctgattacgtgcatatacaaacaaggaacctcaagggtaaatgaaataaacggataattc 8984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 6581 - 6635
Alignment:
Q  41 gttttgatgataacaaattattaaa-gaacaattggatatgctaatcaatgttca 94  Q
    ||||||||||| ||||| ||||||| ||||| |||||||||||||| ||||||||    
T  6581 gttttgatgatgacaaagtattaaaagaacagttggatatgctaataaatgttca 6635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 645 - 701
Alignment:
Q  409 tcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatgt 465  Q
    ||||||||||||  |||||||| ||||| ||| |||||| ||| |||||||||||||    
T  645 tcaaggacaaaaagaatgaacgaataatcccagttgcagtaaatgaatttcaaatgt 701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 42192 - 42240
Alignment:
Q  395 acaaataaagaacctcaaggacaaaagaaatgaacggataattccaatt 443  Q
    ||||| ||||||| ||||||||||||  || ||||||||||||||||||    
T  42192 acaaacaaagaacttcaaggacaaaaagaaagaacggataattccaatt 42240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 464
Target Start/End: Complemental strand, 27983 - 27887
Alignment:
Q  368 tttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatgaacggataattccaattgcagcaaaggaatttcaaatg 464  Q
    |||||| || |||||||||||  ||| ||| | ||| ||| |||||||||| |  |||||||||||| ||| | || |||||||||| |||||||||    
T  27983 tttgtcttcatctgaccatgtatagaaacagacaaataacttcaaggacaataagaatgaacggatacttctattttcagcaaaggattttcaaatg 27887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 28361 - 28317
Alignment:
Q  41 gttttgatgataacaaattattaaagaacaattggatatgctaat 85  Q
    ||||||||||||||||| |||| |||| ||||||||||| |||||    
T  28361 gttttgatgataacaaaatattgaagatcaattggatatactaat 28317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University