View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1115_low_6 (Length: 453)
Name: NF1115_low_6
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 423
Target Start/End: Complemental strand, 14044663 - 14044249
Alignment:
| Q |
7 |
acttaacacaacatgtaagaatctagcgttagtgtagaatttgttttgcactctgtttagaaagaatggcaataatatctttagggaaggagttagtact |
106 |
Q |
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| T |
14044663 |
acttaacacaacatgtaagaatctatcgttaatgtagaattt----tgcactctgtttagaaagaatggcaataatatctttagggagggagttagtact |
14044568 |
T |
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| Q |
107 |
ttgcattttttcacactctgttagtggaagattaggaactcattcattgcagatttcatggaaaaatatatcatagtgtaacttccaattgcataaaacc |
206 |
Q |
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| T |
14044567 |
ttgcattttttcacactctgttagtagaagattaggaactcattcattgcagatttcatggaaaaatatatcataatataacttcctattgcacaaaacc |
14044468 |
T |
|
| Q |
207 |
aaagagaattgctctacggtccatctgttttgctcaaaagtttatcaatttat--cagtgtaactcccgattggtaaaaatatgcttttcttccatttta |
304 |
Q |
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| T |
14044467 |
aaagagaattgctctacggtccatcagttttgctcaaaagtttatcaatttatgagagtgtaacttccgattgcaaaaaatatgcttttcttccatttta |
14044368 |
T |
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| Q |
305 |
tcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactgtttgcggtggcgc |
404 |
Q |
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| T |
14044367 |
tcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgc |
14044268 |
T |
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| Q |
405 |
caccgcctccatctgtttc |
423 |
Q |
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| T |
14044267 |
cgtagcctccgtctgtttc |
14044249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 201 - 423
Target Start/End: Complemental strand, 13930293 - 13930070
Alignment:
| Q |
201 |
aaaaccaaagagaattgctctacggtccatctgttttgctcaaaagtttatcaatttatca--gtgtaactcccgattggtaaaaatatgcttttcttcc |
298 |
Q |
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| T |
13930293 |
aaaaccaaagagaattgctctacggtccatcagttttgctcaaaagtttatccatttatcatagtgtaacttccgattgcaaaaaatatgcttttcttcc |
13930194 |
T |
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| Q |
299 |
attttatcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactgtttgcgg |
398 |
Q |
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| T |
13930193 |
attttatcatatctctcaattgacttatttcaaaatctgcttaatttagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tg |
13930095 |
T |
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| Q |
399 |
tggcgccaccgcctccatctgtttc |
423 |
Q |
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| T |
13930094 |
tggcgccgccgcctccgtctgtttc |
13930070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13930472 - 13930409
Alignment:
| Q |
1 |
agtaaaacttaacacaacatgtaagaatctagcgttagtgtagaatttgttttgcactctgttt |
64 |
Q |
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| T |
13930472 |
agtaaaacttaacacaacatgtaagaacctatcgttaatgtagaatttgttttgcactctgttt |
13930409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
104 |
actttgcattttttcacactctgttagtggaagattaggaactcattcattgcagatt |
161 |
Q |
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| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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