View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1115_low_8 (Length: 364)
Name: NF1115_low_8
Description: NF1115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1115_low_8 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0894 (1 HSPs) |
| | |
|
| [»] scaffold0716 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 61 - 336
Target Start/End: Original strand, 23348258 - 23348535
Alignment:
| Q |
61 |
atcggtgcacctcttaaggtggtagagttcctttatctttcctttaatcactatgcttcacggtctgtttgtccatggagtgggttaatattttgtcttt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348258 |
atcggtgcacctcttaaggtggtagagttcctttatctttcctttaatcattatgcttcacggtctgtttgtccatggagtgggttaatattttgtcttt |
23348357 |
T |
|
| Q |
161 |
gatttagctttctcatggacagattttttaagtcgtatttgatataaaaattg--ttgtcttgttgtaagttccattatcaaagttcaatactgatctat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23348358 |
gatttagctttctcatggacagattttttaagtcgtatttgatataaaaattgttttgttttgttgtaagttccattatcaaaattcaatactgatctat |
23348457 |
T |
|
| Q |
259 |
atgtgattttgatttggtttcaaaattaaaaccactcatgggatttctattttt-gcttctgcttaatcggtttttatt |
336 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
23348458 |
at-tgcttttgatttggtttcaaaattaaaaccactcatgggatttctatttttggcttctgattaatcggtttttatt |
23348535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 40933951 - 40934129
Alignment:
| Q |
159 |
ttgatttagctttctcatggacagatttttt--aagtcgtatttgatataaaaattgtt--gtcttgttgtaagttccattatcaaagttcaatactgat |
254 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||| ||| | |||||| |||||||| | | ||||||| | | |
|
|
| T |
40933951 |
ttgatttatctttctcatggacatatttttttaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccattaccgagattcaatattaac |
40934050 |
T |
|
| Q |
255 |
ctatatgtgattttgatttggtttcaaaattaaaaccactcatgggat-ttctatttttgcttctgcttaatcggtttt |
332 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||||| ||||| |||||| |
|
|
| T |
40934051 |
ctatatgtgcctttgatttagtttccaaattaaaaccactcatgggatctttaatttttgcttctgattaattggtttt |
40934129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 245929 - 246065
Alignment:
| Q |
159 |
ttgatttagctttctcatggacagatttttt-aagtcgtatttgatataaaaattg--ttgtcttgttgtaagttccattatcaaagttcaatactgatc |
255 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||||||||||||| | ||||| ||||| |||||||||||||||||||| |||| ||| | |
|
|
| T |
245929 |
ttgatttatctttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcctgttgtaagttccattatca------aatattgacc |
246022 |
T |
|
| Q |
256 |
tatatgtgattttgatttggtttcaaaattaaaaccactcatg |
298 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
246023 |
tatatgtgcatttgatttagtttccaaattaaaaccactcatg |
246065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 11232947 - 11233126
Alignment:
| Q |
159 |
ttgatttagctttctcatggacagatttttt---aagtcgtatttgatataaaaattgtt--gtcttgttgtaagttccattatcaaagttcaatactga |
253 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||| ||| | |||||| |||||||| | | ||||||| | | |
|
|
| T |
11232947 |
ttgatttatctttctcatggacgtattttttgaaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccattaccgagattcaatattaa |
11233046 |
T |
|
| Q |
254 |
tctatatgtgattttgatttggtttcaaaattaaaaccactcatgggat-ttctatttttgcttctgcttaatcggtttt |
332 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||||| ||||| |||||| |
|
|
| T |
11233047 |
cctatatgtgcctttgatttagtttccaaattaaaaccactcatgggatctttaatttttgcttctgattaattggtttt |
11233126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 298
Target Start/End: Complemental strand, 37282269 - 37282133
Alignment:
| Q |
159 |
ttgatttagctttctcatggacagatttttt-aagtcgtatttgatataaaaattg--ttgtcttgttgtaagttccattatcaaagttcaatactgatc |
255 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||||||||||||| | ||||| ||||| ||||||||||||||||||| |||| ||| | |
|
|
| T |
37282269 |
ttgatttatctttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcccgttgtaagttccattatca------aatattgacc |
37282176 |
T |
|
| Q |
256 |
tatatgtgattttgatttggtttcaaaattaaaaccactcatg |
298 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
37282175 |
tatatgtgcatttgatttagtttccaaattaaaaccactcatg |
37282133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 298
Target Start/End: Complemental strand, 7314148 - 7314022
Alignment:
| Q |
169 |
tttctcatggacagatttttt-aagtcgtatttgatataaaaattgttgtct--tgttgtaagttccattatcaaagttcaatactgatctatatgtgat |
265 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| | ||||||| | | |||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
7314148 |
tttctcatggacatattttttgaagtcgtatttgatggcataattgttttatcctgttgtaagttccattatcaaa------tattgacctatatgtgcc |
7314055 |
T |
|
| Q |
266 |
tttgatttggtttcaaaattaaaaccactcatg |
298 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |
|
|
| T |
7314054 |
tttgatttagtttccaaattaaaaccactcatg |
7314022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 4 - 76
Alignment:
| Q |
220 |
tgttgtaagttccattatcaaagttcaatactgatctatatgtgattttgatttggtttcaaaattaaaaccactcatg |
298 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
4 |
tgttgtaagttccattatcaaa------tattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatg |
76 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 7249 - 7321
Alignment:
| Q |
220 |
tgttgtaagttccattatcaaagttcaatactgatctatatgtgattttgatttggtttcaaaattaaaaccactcatg |
298 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
7249 |
tgttgtaagttccattatcaaa------tattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatg |
7321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 11136613 - 11136541
Alignment:
| Q |
220 |
tgttgtaagttccattatcaaagttcaatactgatctatatgtgattttgatttggtttcaaaattaaaaccactcatg |
298 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
11136613 |
tgttgtaagttccattatcaaa------tattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatg |
11136541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University