View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_high_13 (Length: 392)
Name: NF11160_high_13
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_high_13 |
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| [»] scaffold0361 (2 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 12795 - 12434
Alignment:
| Q |
19 |
ctggtaacgtaatttactaactgaatcatgttttatatgtcagttctctagctgaacttgtaatgcctagagttcggtgaactgcgaccaaccgtgaacc |
118 |
Q |
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| T |
12795 |
ctggtaacgtaatttactaactgaatcatgttttatatgtcagttctctagctgaacttgtaatgcctagagttcggtgaactgcgaccaaccgtgaacc |
12696 |
T |
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| Q |
119 |
ttctattgtgaaatcaagcttcaggccttagaaaaataacagtaacatgagataattcatatcccctagatttatcatctcatggtgatattgtttgagt |
218 |
Q |
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| T |
12695 |
ttctattgtgaaatcaagcttcaggccttagaaaaataacagtaacatgagataattcatatcccctagatttatcatctcatggtgatattgtttgagt |
12596 |
T |
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| Q |
219 |
gcaattcccctttttgcataatttcgatagattgaagnnnnnnnnnnnnngaatcacaagctcgtgatattgctactacgatgtgatggttagcacttag |
318 |
Q |
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| T |
12595 |
gcaattcccctttttgcataatttcgatagattgaagtttttttctttttgaatcacaagctcgtgatattgctactacgatgtgatggttagcacttag |
12496 |
T |
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| Q |
319 |
ccgatacatattcacttaatgggacaggtgtttcttgctatgttgtttcaattctacttcat |
380 |
Q |
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| T |
12495 |
ccgatacatattcacttaatgggacaggtgtttcttgctatgttgtttcaattctacttcat |
12434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 17256 - 17316
Alignment:
| Q |
28 |
taatttactaactgaatcatgtttta-tatgtcagttctctagctgaacttgtaatgccta |
87 |
Q |
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| T |
17256 |
taatttactaactgaaccatgtgtaaatatgtcagttctctaactgaacttgtaatgccta |
17316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 4948133 - 4947946
Alignment:
| Q |
23 |
taacgtaatttactaactgaatcatgttttatatgtcagttctctagctgaacttgtaatgcctagagttcggtgaactgcgaccaaccgtgaaccttct |
122 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
4948133 |
taacgtgatttactaactgaatcatgtttaatatgtcagttctctagctgaacttgtaatgcttagaattcggtgaactgcgaccaactgtgaaccttct |
4948034 |
T |
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| Q |
123 |
attgtgaaatcaagcttcaggccttagaaaaataacagtaacatgagataattcatatcccctagatttatcatctcatggtgatatt |
210 |
Q |
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| T |
4948033 |
attgtgaaatcaagcttcaggccttagaacaataacagtaacatgagataattcatatcccctagatatatcatctcatggtgatatt |
4947946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 4947889 - 4947796
Alignment:
| Q |
285 |
atattgctactacgatgtgatggttagcacttagccgatacatattcacttaatgggacaggtgtttcttgctatgttgtttcaattctacttca |
379 |
Q |
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| T |
4947889 |
atattgctactacgatgtgatggttagcacttagctgatac-tattcatataatgggacatgtgtttcttgctatgttgtttcaattctacttca |
4947796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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