View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_10 (Length: 441)
Name: NF11160_low_10
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 53943299 - 53942964
Alignment:
| Q |
14 |
agaccgataaacaaatatacattacaaaacacatttccattgaattaaaatcaaggaaataaacaaaccttacatgaagaacataaatcatcgtagaggc |
113 |
Q |
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| T |
53943299 |
agaccgataaacaaatatacattacaaaacacatttccattgaattaaaatcaaggaaataaacaaaccttacatgaagaacataaatcatcgtagaggc |
53943200 |
T |
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| Q |
114 |
tagataaatgtgacataggaagagaagcatttatgcaagaaactcttctaaaggccttatttttccctgaaacacgctccttaagtgcttcaaactcacg |
213 |
Q |
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| T |
53943199 |
tagataaatgtgacataggaagagaagcatttatgcaagaaactcttctaaaggccttatttttccctgaaacacgctccttaagtgcttcaaactcacg |
53943100 |
T |
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| Q |
214 |
ttcagccaagtacttagcatgatcctaacagaacttgacaaacacgaaaaacccatcttttatcacaatccaaacacacccttttgcaattcagtagcgt |
313 |
Q |
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| T |
53943099 |
ttcagccaagtacttagcatgatcctaacagaacttgacaaacacgaaaaacccatcttttatcacaatccaaacacacccttttgcaattcagtagc-t |
53943001 |
T |
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| Q |
314 |
aaaaacaataatagaagcgaaaatttcatatttttac |
350 |
Q |
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| T |
53943000 |
aaaaacaataacagtagctaaaatttcatatttttac |
53942964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 53942929 - 53942887
Alignment:
| Q |
385 |
ctcacttggagtccgaaagtgtctggacgaaattggttgaagg |
427 |
Q |
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| T |
53942929 |
ctcacttggagtccgaaagtgtctggacgaaattggttgaagg |
53942887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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