View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_11 (Length: 426)
Name: NF11160_low_11
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 2151752 - 2152119
Alignment:
| Q |
21 |
ttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaactcnnnnn |
120 |
Q |
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| T |
2151752 |
ttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttttcttaattggaatgggaactcaaaaa |
2151851 |
T |
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| Q |
121 |
nn-gttccgacgagtttccacaatgtctcttgtcacaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaat |
219 |
Q |
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| T |
2151852 |
aaagatccgacgagtttccacaatgtctcttgtcacacattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaat |
2151951 |
T |
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| Q |
220 |
tttcaaggtagccattagatatgagagt---------ggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtg |
310 |
Q |
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| T |
2151952 |
tttcaaggtagccattagatatgagagtggtgcttgaggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtg |
2152051 |
T |
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| Q |
311 |
taaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattttttatatat |
378 |
Q |
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| T |
2152052 |
taaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattatatatatat |
2152119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 2146342 - 2146433
Alignment:
| Q |
21 |
ttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaa |
112 |
Q |
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| T |
2146342 |
ttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
154 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
243 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
161 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
247 |
Q |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 2142218 - 2142267
Alignment:
| Q |
22 |
tattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttga |
71 |
Q |
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| T |
2142218 |
tattgttgcaataaacttcaaatcctgggtacccacatcgatcactttga |
2142267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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