View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_12 (Length: 417)
Name: NF11160_low_12
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 8683050 - 8683449
Alignment:
| Q |
19 |
aactcttggcattacagttctgattccaactataattgttcctcaaatgggtggaggagatgtgagaaatatttctgatcaatttgtatttgcttttaat |
118 |
Q |
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| T |
8683050 |
aactcttggcattacagttctgattccaactataattgttcctcaaatgggtggaggagatgtgagaaatatttctgatcaatttgtatttgcttttaat |
8683149 |
T |
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| Q |
119 |
tttaagcaacttttataatagtattaatgaacaaaatggtttgattcaatgtaggctgagaagactagggtgatacagacacttctatttgtgtctggac |
218 |
Q |
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| T |
8683150 |
tttaagcaacttttataatagtattaatgaacaaaatggtttgattcaatgtaggctgagaagactagggtgatacagacacttctatttgtgtctggac |
8683249 |
T |
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| Q |
219 |
taagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttctattgttcaggctag |
318 |
Q |
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| T |
8683250 |
taagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttctattgttcaggctag |
8683349 |
T |
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| Q |
319 |
cagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctg-ttttttcgtacatgttataaatggaaaatgtttcactctt |
417 |
Q |
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| T |
8683350 |
cagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctgtttttttcgtacatgttataaatggaaaatgtttcactctt |
8683449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 206 - 351
Target Start/End: Original strand, 47579540 - 47579685
Alignment:
| Q |
206 |
tttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttcta |
305 |
Q |
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| T |
47579540 |
tttgtttctggactgagcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcag |
47579639 |
T |
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| Q |
306 |
ttgttcaggctagcagatataatgcatatacagatccttatgaggt |
351 |
Q |
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| T |
47579640 |
ctgttcaagctagcagatacagttcatatacagatccttatgaggt |
47579685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 47579340 - 47579393
Alignment:
| Q |
20 |
actcttggcattacagttctgattccaactataattgttcctcaaatgggtgga |
73 |
Q |
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| T |
47579340 |
actcttggcatgacagttttgattccaactatagttgttcctcaaatgggtgga |
47579393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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