View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_18 (Length: 295)
Name: NF11160_low_18
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 32143142 - 32142884
Alignment:
| Q |
17 |
ctctactgtgatggaaaataaagaaaatgaggaagaggtagtcatggctaatattactgaaccaacaaattacgttgaaacaactacaacctcgaatgat |
116 |
Q |
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| T |
32143142 |
ctctactgtgatggaaaataaagaaaatgaggaagaggtagtcatggctaatattactgaaccaacaagttacgttgaaacaactacaacctcgaatgat |
32143043 |
T |
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| Q |
117 |
catgatgaagaaaccctaatgaattctcaaagcaatagctttgaaagaaacttcaaagagtgtagaaagaatcacgcttccagcattggaggctacgctc |
216 |
Q |
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| T |
32143042 |
catgttgaagaaaccctaatgaattctcaaagcaatagctttgaaagaaacttcaaagagtgtagaaagaatcacgcttccagcattggaggctacgctc |
32142943 |
T |
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| Q |
217 |
ttgatggttgtggcgagtttttacccgctggaattgaaggaaccatcgaatttttcaca |
275 |
Q |
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| T |
32142942 |
ttgatggttgtggcgagtttttacccgctggaattgaaggaaccatcgaatttttcaca |
32142884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 28906029 - 28905783
Alignment:
| Q |
27 |
atggaaaataaagaaaatgaggaagaggtagtcatggctaatattactgaaccaacaaattacgttgaaacaactacaacctcgaatgatcatgatgaag |
126 |
Q |
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| T |
28906029 |
atggaaaataaagaaaatgaggaagaggtagtcatggctaatattactgaaccaacaagttacgttgaaacaactaaaaccttgaatcatcatgatgaag |
28905930 |
T |
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| Q |
127 |
aaaccctaatgaattctcaaagcaatagctttgaaagaaacttcaaagagtgtagaaagaatcacgcttccagcattggaggctacgctcttgatggttg |
226 |
Q |
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| T |
28905929 |
aaaccctaatgaattctcaaagcaatagcttcgaagaaaagttcaaagagtgtagaaagaatcatgcttccagcattggaggctacgctcttgatggttg |
28905830 |
T |
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| Q |
227 |
tggcgagtttttacccgctggaattgaaggaaccatcgaatttttca |
273 |
Q |
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| T |
28905829 |
tggcgagtttttacccgctggaattgaagggaccatcgaatttttca |
28905783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 15978475 - 15978529
Alignment:
| Q |
194 |
ttccagcattggaggctacgctcttgatggttgtggcgagtttttacccgctgga |
248 |
Q |
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| T |
15978475 |
ttccagtattggaggctactctcttgatggttgtcgtgagtttttacctgctgga |
15978529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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