View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_2 (Length: 557)
Name: NF11160_low_2
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 214 - 554
Target Start/End: Complemental strand, 27939909 - 27939569
Alignment:
| Q |
214 |
cttttcatgtacaattattcgctctgcgtttaaaccagatcaaaattaaataattaattttcattccttcgagttccacacccccttcgacatcatcacc |
313 |
Q |
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| T |
27939909 |
cttttcatgtacaattattcggtctgagtttaaaccagatcaaaaataaataattaattttcattccttcgagttccacacccccttcgacatcatcacc |
27939810 |
T |
|
| Q |
314 |
aaaaaatctcaactgagaaagtgtcccacgttttcctttacccctttcaatgttgacaaaaacccactaagctaccttccatggagaatatcaaagtttc |
413 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27939809 |
aaaaaatctccactgagaaagtgtcccacgttttcctttacccctttcaatgttgacaaaaacccactaagctaccttctatggagaatatcaaagtttc |
27939710 |
T |
|
| Q |
414 |
gatttttctctgattcggtataaactgaccaaatactgtgctgaagcaatgcgtagagagatcgcgtttctcgctcagcctcgattcctcattctcctcc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939709 |
gatttttctctgattcggtataaactgaccaaatactgtgctgaagcaatgcgtagagagatcgcgtttctcgctcagcctcgattcctcattctcctcc |
27939610 |
T |
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| Q |
514 |
ttgttctctcaattttcattattttcgcattctctgcttct |
554 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27939609 |
ttgttctctcaattttcattattttcgcattctcttcttct |
27939569 |
T |
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