View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_23 (Length: 250)
Name: NF11160_low_23
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_23 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 749772 - 749970
Alignment:
| Q |
52 |
atgatgttaacacttaactactgttctgaatatgatttgtgatttaatattactcatcaattgtgtttgtagttttaatttccaagaaagatgcttactt |
151 |
Q |
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| T |
749772 |
atgacgttaacacttaactactgttctgaatatgatttgtgatttaatattactcatcaattgtgtttgtagttttaatttccaagaaagatgcttactt |
749871 |
T |
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| Q |
152 |
gttagtgccgtaattgacaaggttagcaaacaaaattccaatggtgacattgagctggaacagtatattcaaagctccacgaattcttgaaggtgcaat |
250 |
Q |
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| T |
749872 |
gttagtgccgtaattgacaaggttagcaaacaaaattccaatggtgacattgagctggaacagtatattcaaagctccacgaattcttgaaggtgcaat |
749970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 47211291 - 47211186
Alignment:
| Q |
145 |
cttacttgttagtgccgtaattgacaaggttagcaaacaaaattccaatggtgacattgagctggaacagtatattcaaagctccacgaattcttgaagg |
244 |
Q |
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| T |
47211291 |
cttacttgttggtggcataattgacaaggttagcaaagagaatgccaagagtgatatcaagctgaaacagtatattcaatgctccacgtattctagaagg |
47211192 |
T |
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| Q |
245 |
tgcaat |
250 |
Q |
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| T |
47211191 |
tgcaat |
47211186 |
T |
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