View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11160_low_4 (Length: 537)
Name: NF11160_low_4
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Complemental strand, 38375195 - 38374712
Alignment:
| Q |
15 |
tcaaattttacaaacttgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375195 |
tcaaattttacaaacttgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtc |
38375096 |
T |
|
| Q |
115 |
aaaattaataaaaatggaaaagaaatgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaatccaacata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375095 |
aaaattaataaaaatggaaaagaaatgtgtgagtgtatgacttgtgg------------------cggaagatcaggtatctctcatctaatccaacata |
38375014 |
T |
|
| Q |
215 |
ttcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaaagagctcaatcataacatggttcgtgaatcgatgactcaaatgac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375013 |
ttcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaa---------tcataacatggttcgtgaatcgatgactcaaatgac |
38374923 |
T |
|
| Q |
315 |
tataaaacatcgtcttccatttcactttgttgagtggcataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccagatat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38374922 |
tataaaacatcgtcttccatttcactttgttgagtgggataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccagatat |
38374823 |
T |
|
| Q |
415 |
ggtcttgctgatgatgtgatgaaagtttacttgcttcagaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagttttcgtt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38374822 |
ggtcttgctgatgatgtgatgaaagtttacttgcttcaaaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagttttcgtt |
38374723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 40 - 525
Target Start/End: Complemental strand, 38380361 - 38379876
Alignment:
| Q |
40 |
gcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatggaaaagaaa |
139 |
Q |
| |
|
|||||||||| | | |||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
38380361 |
gcatattctgattatggtgattccgaacctccaaagaaaaggcttaaaaggtttaatgtttggaactactttgtcaaagttcataaagatggaaaagaaa |
38380262 |
T |
|
| Q |
140 |
tgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaatccaacatattcccaaatgtcctttgattatgaa |
239 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
38380261 |
tgtgtgaatgtatgacttgtgggagagtgtttacttgtgatggaaggtcaggtaactctcatctaaacctacatattcccgtatgtcctttggttatgaa |
38380162 |
T |
|
| Q |
240 |
atcttgtattgctgagtacttcgagctcaaagagctcaatcataacatggttcgtgaatcgatgactcaaatgactataaaacatcgtcttccatttcac |
339 |
Q |
| |
|
|||| ||||||| ||| | ||| |||||||| || | |||||| |||||||||||||| || |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
38380161 |
atctcgtattgccgagcatttcaagctcaaaaagattgatcataggatggttcgtgaatcaattactcaaatgactataaaaaatcatcttccatttcgg |
38380062 |
T |
|
| Q |
340 |
tttgttgagtggcataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccagatatggtcttgctgatgatgtgatgaaag |
439 |
Q |
| |
|
| |||||||||| | ||||||||| |||||| ||||||||||| ||||||||||||||||| || ||||||||| ||||| ||||||||||||||| |
|
|
| T |
38380061 |
tctgttgagtggggtgaatttagggaattcactaaatttgtttcgttcaatgaggctcaatttctttctagatatggtgttgctaatgatgtgatgaaag |
38379962 |
T |
|
| Q |
440 |
tttacttgcttcagaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagttttcgttgttggacttct |
525 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||||||||| |||| ||| || ||| || |||||||||| |||||||||||||||||| |
|
|
| T |
38379961 |
tttacttgcttgaaaaagagaaattgaaaaaacagcttgctgcaattgagggtggagtgtgtttgagctttcgttgttggacttct |
38379876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 31 - 525
Target Start/End: Complemental strand, 38370477 - 38369983
Alignment:
| Q |
31 |
tgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatg |
130 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
|
|
| T |
38370477 |
tgtaactcagcatattctgatg---gtgatcatgaaccaccaaataagaagcttaaaaggtttaatgtttggaactactttgttaaaattgaagcagatg |
38370381 |
T |
|
| Q |
131 |
gaaaagaaatgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaa------tccaacatattcccaaatg |
224 |
Q |
| |
|
| |||||| ||||||| |||| ||||||||||||| ||||| || | ||||| ||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
38370380 |
gtaaagaactgtgtgaatgtaaaacttgtgggaaacagtttatttct---ggaaggacaggtatatctcatctaaaccaagtccaacatattaccaaatg |
38370284 |
T |
|
| Q |
225 |
tcctttgattatgaaatcttgtattgctgagtacttcgagctcaaagagctcaatcataacatggttcgtgaatcgatgactcaaatgactataaaacat |
324 |
Q |
| |
|
||||||||||||||||||| ||||||| || | ||| ||||||| | | |||||| ||||||||||| ||| | |||||||||||||||||| | |
|
|
| T |
38370283 |
tcctttgattatgaaatctcgtattgccaagcatttcaagctcaacaaaattgatcataggatggttcgtgattcggttactcaaatgactataaaaagt |
38370184 |
T |
|
| Q |
325 |
cgtcttccatttcactttgttgagtggcataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccagatatggtcttgctg |
424 |
Q |
| |
|
|||||||||| |||| ||||||| || ||||||||||||| |||||||||| |||| ||||||||||| || ||| || ||| || | ||| | |
|
|
| T |
38370183 |
tacattccatttcagtttgctgagtgggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcgatctctttctagagataatgttgtcg |
38370084 |
T |
|
| Q |
425 |
atgatgtgatgaaagtttacttgcttcagaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagttttcgttgttggacttc |
524 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||| ||||||||||||| |||| | | | ||| || |||||||||| |||| |||||||||||| |
|
|
| T |
38370083 |
ctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttgagctttcattgttggacttc |
38369984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University