View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_5 (Length: 489)
Name: NF11160_low_5
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 180 - 322
Target Start/End: Complemental strand, 52548809 - 52548674
Alignment:
| Q |
180 |
ttgaggtgtctatcgaacaatttcaacaaactaacttgccaatgacaaatatattgacatcagcccaattatcctctcattcttattaaacttgatttta |
279 |
Q |
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| T |
52548809 |
ttgaggtgtctatcgagcaatttcaacaaactagcttgccagtgacaaatatattgacatcagccc-------ctctcattcttattaaacttgatttta |
52548717 |
T |
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| Q |
280 |
tcatatcaaaggaaagtgacatcagcccaattttctttgattg |
322 |
Q |
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| T |
52548716 |
tcatatcaaaggaaagtgacatcagcccaatttcctttgattg |
52548674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 52548584 - 52548524
Alignment:
| Q |
412 |
tctactcacattagcttctttgatttaatcaataaatcattcattaaacataataagatgt |
472 |
Q |
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| T |
52548584 |
tctactcacattagcttctttgatttaatcaataaatcattcattaaacataataagatgt |
52548524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 52548876 - 52548830
Alignment:
| Q |
35 |
aaatcaaaatcaaattcatttaacacatacaaaccacattcgtctct |
81 |
Q |
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| T |
52548876 |
aaatcaaaatcaaattcatttaacacatataaaccacattcgtctct |
52548830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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