View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_6 (Length: 481)
Name: NF11160_low_6
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 35373052 - 35373457
Alignment:
| Q |
17 |
gaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatattctcacaaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35373052 |
gaatgttcatgaatgtggtgacactatacttagcactgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatatcctcacaaat |
35373151 |
T |
|
| Q |
117 |
taaccaattgtgacaaatgggtttatgttatcgatatacattcttcttgtttgagttatcaaagtttgtttttcattatcaaaacatgaaggttgaccgg |
216 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373152 |
taaccaagtgtgacaaatgggtttacattattgatatacattcttcttgtttgagttatcaaagtttgtttttcattatcaaaacatgaaggttgaccgg |
35373251 |
T |
|
| Q |
217 |
agtttttgaactctaagatttccatgtatgttctnnnnnnnnnnnnnnnnntccatttatgctatttaaatttaagatgttttgaaattactactaaaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373252 |
agtttttgaactctaagatttccatgtatgttctaaaaaa------------ccatgtatgctatttaaatttaagatgttttgaaattactactaaaag |
35373339 |
T |
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| Q |
317 |
tgaatggttactttcattttatatctcaatttatcgatattacttgagcgattaatttttgtcaataacttttcgacatttctatataaggcaataacta |
416 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35373340 |
tgaatggttactttcattttatatctcgatttatcgatattacttgatcgattaatttttgtcaataacttttcgacatttctatataaggc---aacta |
35373436 |
T |
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| Q |
417 |
gcaattttagtttgtgttcaa |
437 |
Q |
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| T |
35373437 |
gcaattttagtttgtgttcaa |
35373457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 35360683 - 35360825
Alignment:
| Q |
17 |
gaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatattctcacaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35360683 |
gaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaagaatattctcacaaat |
35360782 |
T |
|
| Q |
117 |
taaccaattgtgacaaatgggtttatgttatcgatatacattc |
159 |
Q |
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| T |
35360783 |
taaccaagtgtgacaaatgggtttacattatcgatatacattc |
35360825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 35383055 - 35383140
Alignment:
| Q |
17 |
gaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttccaacctctgaaga |
102 |
Q |
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| T |
35383055 |
gaatgttcatgaatgtggtgacactatacttagcactgagaaagtttgggaagcaagtattcgtcatggtttccaacctctaaaga |
35383140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 19691187 - 19691260
Alignment:
| Q |
17 |
gaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
90 |
Q |
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|||||||||||| |||||||||||| || || |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19691187 |
gaatgttcatgagtgtggtgacactgtatttgacattgagaaagtatgggaagcaagtattcgccatggtttcc |
19691260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 19701772 - 19701845
Alignment:
| Q |
17 |
gaatgttcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtttcc |
90 |
Q |
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|||||||||||| |||||||||||| || || |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19701772 |
gaatgttcatgagtgtggtgacactgtatttgacattgagaaagtatgggaagcaagtattcgccatggtttcc |
19701845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 19625677 - 19625613
Alignment:
| Q |
23 |
tcatgaatgtggtgacactatacttagcattgagaaagtttgggaagcaagtattcgtcatggtt |
87 |
Q |
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|||||| ||||| |||||| || ||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
19625677 |
tcatgagtgtggcgacactgtatttaacattgagaaagtatgggaagcaagtattcgtcatggtt |
19625613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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